RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA734313" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA734313 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1196728 1196728 PRJNA734313_S_NODE_30641_length_166_cov_2.302521_g30528_i0 PRJNA734313 30641 166 2.302521 3.82218486 root 1 Root_unresolved Root_unresolved 303 3.48e-78   NTclustered gi|51241577|emb|AJ810271.1| 860 g30528 i0 100 158.301204819277 164 0 99 0 1 164 15 178 Fusobacterium periodonticum partial 16S rRNA gene, strain KP-F10 blastn 26278 305 0.99344262295082 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
1992700 1992700 PRJNA734313_S_NODE_10422_length_291_cov_1.155738_g10309_i0 PRJNA734313 10422 291 1.155738 3.36319758 Fusobacterium animalis 76859 Bacteria Bacteria 425 1.38e-114   NTclustered gi|2706469457|gb|CP084078.1| 76859 g10309 i0 94.014 476.714776632302 284 11 98 5 8 291 545426 545149 Fusobacterium animalis strain SB053 chromosome, complete genome blastn 138724 425 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
3268009 3268009 PRJNA734313_S_NODE_11063_length_282_cov_7.463830_g10950_i0 PRJNA734313 11063 282 7.46383 21.0480006 Fusobacterium gonidiaformans 849 Bacteria Bacteria 52.8 0.026   NTclustered gi|1370530246|gb|CP028106.1| 469615 g10950 i0 100 0.099290780141844 28 0 10 0 219 246 1577412 1577439 Fusobacterium gonidiaformans ATCC 25563 chromosome, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans
13470459 13470459 PRJNA734313_S_NODE_31831_length_164_cov_1.307692_g31718_i0 PRJNA734313 31831 164 1.307692 2.14461488 Fusobacterium hwasookii 1583098 Bacteria Bacteria 292 7.41e-75   NTclustered gi|958162200|gb|CP013331.1| 1307442 g31718 i0 99.379 97.4390243902439 161 1 98 0 4 164 388931 388771 Fusobacterium hwasookii ChDC F174, complete genome blastn 15980 292 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;