RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA734313" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA734313 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2472108 2472108 PRJNA734313_S_NODE_12782_length_263_cov_1.537037_g12669_i0 PRJNA734313 12782 263 1.537037 4.04240731 Parachlamydia 83551 Bacteria Bacteria 486 5.5499999999999986e-133   NTclustered gi|339764877|gb|JN051144.1| 83552 g12669 i0 100 110.695817490494 263 0 100 0 1 263 494 232 Parachlamydia acanthamoebae strain NS2 16S ribosomal RNA gene, partial sequence blastn 29113 486 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
2472117 2472117 PRJNA734313_S_NODE_22462_length_196_cov_2.637584_g22349_i0 PRJNA734313 22462 196 2.637584 5.16966464 Parachlamydia 83551 Bacteria Bacteria 327 2.52e-85   NTclustered gi|470491594|ref|NR_077046.1| 83552 g22349 i0 100 164.178571428571 177 0 90 0 20 196 1076 1252 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 32179 327 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
5025023 5025023 PRJNA734313_S_NODE_2964_length_467_cov_2.392857_g2856_i0 PRJNA734313 2964 467 2.392857 11.17464219 Parachlamydia 83551 Bacteria Bacteria 817 0   NTclustered gi|470491594|ref|NR_077046.1| 83552 g2856 i0 100 153.147751605996 442 0 95 0 1 442 1697 1256 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 71520 817 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
12676365 12676365 PRJNA734313_S_NODE_7850_length_331_cov_1.665493_g7737_i0 PRJNA734313 7850 331 1.665493 5.51278183 Parachlamydia 83551 Bacteria Bacteria 606 5.299999999999998e-169   NTclustered gi|470491594|ref|NR_077046.1| 83552 g7737 i0 99.698 103.586102719033 331 1 100 0 1 331 466 136 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 34287 606 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;