RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA733995" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 2 ✖

bioproject 1

  • PRJNA733995 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19843561 19843561 PRJNA733995_P_NODE_2876_length_527_cov_1.017621_g2829_i0 PRJNA733995 2876 527 1.017621 5.36286267 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 856 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g2829 i0 95.825 1 527 22 100 0 1 527 6508 7034 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 527 856 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
23669659 23669659 PRJNA733995_P_NODE_13999_length_235_cov_3.666667_g13952_i0 PRJNA733995 13999 235 3.666667 8.61666745 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 368 1.84e-97   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g13952 i0 94.894 1 235 12 100 0 1 235 6187 5953 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 235 368 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;