RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA728642" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA728642 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8366143 8366143 PRJNA728642_P_NODE_19167_length_242_cov_0.911243_g18896_i0 PRJNA728642 19167 242 0.911243 2.20520806 Acusta ravida 2603701 Mollusca Mollusca 243 1.2100000000000004e-59   NTclustered gi|2785812303|gb|PQ166711.1| 2603701 g18896 i0 85.062 1.15289256198347 241 32 98 4 1 237 10079 10319 Acusta ravida mitochondrion, complete genome blastn 279 243 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Acusta Acusta ravida
16015424 16015424 PRJNA728642_P_NODE_3153_length_589_cov_4.040698_g2884_i0 PRJNA728642 3153 589 4.040698 23.79971122 Leptochiton asellus 211853 Mollusca Mollusca 176 3.31e-39   NTclustered gi|34369208|gb|AY145414.1| 211853 g2884 i0 85.38 2.50933786078098 171 24 29 1 1 171 2544 2713 Leptochiton asellus 28S ribosomal RNA gene, partial sequence blastn 1478 176 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Lepidopleurida Lepidopleuridae Leptochiton Leptochiton asellus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;