RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA728642" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA728642 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1988805 1988805 PRJNA728642_P_NODE_15002_length_258_cov_2.756757_g14731_i0 PRJNA728642 15002 258 2.756757 7.11243306 Protaspis grandis 361427 SAR_Eukaryotes SAR_Eukaryotes 281 2.75e-71   NTclustered gi|290760486|gb|GQ144689.1| 361427 g14731 i0 86.364 48.9573643410853 264 28 100 7 1 258 2050 2311 Protaspis grandis large subunit ribosomal RNA gene, partial sequence blastn 12631 281 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Protaspis Protaspis grandis
1988813 1988813 PRJNA728642_P_NODE_15342_length_255_cov_1.285714_g15071_i0 PRJNA728642 15342 255 1.285714 3.2785707 uncultured Glissomonadida 1821250 SAR_Eukaryotes SAR_Eukaryotes 470 5.4e-128   NTclustered gi|1915672960|emb|LR866573.1| 1821250 g15071 i0 100 99.8039215686274 254 0 99 0 1 254 254 1 uncultured Glissomonadida partial 18S rRNA gene blastn 25450 470 1 Eukaryota Sar   Cercozoa   Glissomonadida     uncultured Glissomonadida
8366024 8366024 PRJNA728642_P_NODE_13527_length_273_cov_2.530000_g13256_i0 PRJNA728642 13527 273 2.53 6.9069 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 287 6.31e-73   NTclustered gi|238617605|gb|FJ973380.1| 45107 g13256 i0 85.614 34.959706959707 285 27 100 9 1 273 1873 1591 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 9544 287 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
17291037 17291037 PRJNA728642_P_NODE_8374_length_351_cov_10.212230_g8103_i0 PRJNA728642 8374 351 10.21223 35.8449273 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 148 4.11e-31   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g8103 i0 81.421 35.1538461538462 183 32 52 2 1 182 3659 3840 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 12339 148 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;