RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA728642" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 7 ✖

bioproject 1

  • PRJNA728642 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3746603 3746603 PRJNA728642_P_NODE_12003_length_291_cov_1.059633_g11732_i0 PRJNA728642 12003 291 1.059633 3.08353203 Gammaretrovirus 153135 Viruses Viruses 532 7.9e-147   NTclustered gi|82582295|gb|DQ241301.1| 356663 g11732 i0 99.656 110.508591065292 291 1 100 0 1 291 8108 7818 Xenotropic MuLV-related virus VP35, complete genome blastn 32158 532 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
4541234 4541234 PRJNA728642_P_NODE_18384_length_244_cov_0.900585_g18113_i0 PRJNA728642 18384 244 0.900585 2.1974274 Citrus blight-associated pararetrovirus 2689385 Viruses Viruses 418 1.8799999999999994e-112   NTclustered gi|1785997357|gb|MN814438.1| 2689385 g18113 i0 98.723 1.93852459016393 235 3 96 0 10 244 5391 5157 Citrus blight-associated pararetrovirus isolate CBaPRV-LC, complete genome blastn 473 418 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Citrus blight-associated pararetrovirus
8848239 8848239 PRJNA728642_P_NODE_9407_length_332_cov_1.189189_g9136_i0 PRJNA728642 9407 332 1.189189 3.94810748 Betaretrovirus 140052 Viruses Viruses 608 1.479999999999999e-169   NTclustered gi|1666023499|gb|MK561030.1| 11856 g9136 i0 99.699 3 332 1 100 0 1 332 1167 836 Squirrel monkey retrovirus, complete genome blastn 996 608 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
10123593 10123593 PRJNA728642_P_NODE_4068_length_514_cov_2.519274_g3797_i0 PRJNA728642 4068 514 2.519274 12.94906836 Betaretrovirus 140052 Viruses Viruses 950 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g3797 i0 100 3.40466926070039 514 0 100 0 1 514 4363 3850 Squirrel monkey retrovirus - HLB, complete genome blastn 1750 950 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
21597063 21597063 PRJNA728642_P_NODE_13977_length_269_cov_1.551020_g13706_i0 PRJNA728642 13977 269 1.55102 4.1722438 Betaretrovirus 140052 Viruses Viruses 481 2.65e-131   NTclustered gi|9627014|ref|NC_001514.1| 11856 g13706 i0 98.885 3.7546468401487 269 3 100 0 1 269 1747 1479 Squirrel monkey retrovirus - HLB, complete genome blastn 1010 481 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
21597179 21597179 PRJNA728642_P_NODE_2177_length_708_cov_1.707087_g1916_i0 PRJNA728642 2177 708 1.707087 12.08617596 Betaretrovirus 140052 Viruses Viruses 1293 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g1916 i0 99.577 3.58757062146893 710 1 100 2 1 708 2985 3694 Squirrel monkey retrovirus - HLB, complete genome blastn 2540 1293 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
25421585 25421585 PRJNA728642_P_NODE_20_length_4613_cov_3.704626_g10_i0 PRJNA728642 20 4613 3.704626 170.89439738 Betaretrovirus 140052 Viruses Viruses 8233 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g10 i0 99.755 5.05094298721006 4491 11 100 0 123 4613 8785 4295 Squirrel monkey retrovirus - HLB, complete genome blastn 23300 8233 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;