RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA728642" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 11 ✖

bioproject 1

  • PRJNA728642 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
713004 713004 PRJNA728642_P_NODE_9581_length_328_cov_5.839216_g9310_i0 PRJNA728642 9581 328 5.839216 19.15262848 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 590 5.29e-164   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g9310 i0 99.689 43.6585365853659 322 1 98 0 7 328 2664 2343 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 14320 590 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
3264298 3264298 PRJNA728642_P_NODE_7143_length_383_cov_0.993548_g6872_i0 PRJNA728642 7143 383 0.993548 3.80528884 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 617 2.8699999999999997e-172   NTclustered gi|11466174|ref|NC_002573.1| 5762 g6872 i0 95.833 1.00261096605744 384 13 100 3 1 383 525 144 Naegleria gruberi mitochondrion, complete genome blastn 384 617 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
5023116 5023116 PRJNA728642_P_NODE_12204_length_288_cov_2.148837_g11933_i0 PRJNA728642 12204 288 2.148837 6.18865056 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 516 7.86e-142   NTclustered gi|198250379|gb|EU696948.1| 556273 g11933 i0 98.958 76.1631944444444 288 3 100 0 1 288 1253 966 Allovahlkampfia spelaea strain SK1 18S ribosomal RNA gene, complete sequence blastn 21935 516 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia spelaea
8365991 8365991 PRJNA728642_P_NODE_12227_length_288_cov_1.432558_g11956_i0 PRJNA728642 12227 288 1.432558 4.12576704 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 488 1.7099999999999998e-133   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g11956 i0 97.232 59.4791666666667 289 6 100 2 1 288 3082 2795 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17130 488 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
12674420 12674420 PRJNA728642_P_NODE_12110_length_289_cov_2.138889_g11839_i0 PRJNA728642 12110 289 2.138889 6.18138921 Naegleria 5761 Heterolobosea other_Eukaryota 529 1.01e-145   NTclustered gi|2618963742|gb|OR769034.1| 5762 g11839 i0 99.654 10.1280276816609 289 1 100 0 1 289 5794 5506 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2927 529 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13466717 13466717 PRJNA728642_P_NODE_7451_length_375_cov_0.956954_g7180_i0 PRJNA728642 7451 375 0.956954 3.5885775 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 680 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g7180 i0 99.465 56.0186666666667 374 2 99 0 1 374 3427 3054 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21007 680 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
17290810 17290810 PRJNA728642_P_NODE_15374_length_255_cov_0.917582_g15103_i0 PRJNA728642 15374 255 0.917582 2.3398341 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 355 1.58e-93   NTclustered gi|290987763|ref|XM_002676546.1| 5762 g15103 i0 92.4 190.058823529412 250 17 98 2 1 249 280 32 Naegleria gruberi polyubiquitin (NAEGRDRAFT_55791), mRNA blastn 48465 355 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
18564450 18564450 PRJNA728642_P_NODE_10935_length_306_cov_1.708155_g10664_i0 PRJNA728642 10935 306 1.708155 5.2269543 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 459 1.4399999999999999e-124   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g10664 i0 93.791 5.56862745098039 306 17 100 2 1 306 3614 3917 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1704 459 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
18564529 18564529 PRJNA728642_P_NODE_14995_length_258_cov_5.464865_g14724_i0 PRJNA728642 14995 258 5.464865 14.0993517 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 477 3.2699999999999985e-130   NTclustered gi|529154115|gb|EU266548.2| 500012 g14724 i0 100 71.7945736434109 258 0 100 0 1 258 1711 1454 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 18523 477 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
19839990 19839990 PRJNA728642_P_NODE_9216_length_335_cov_1.396947_g8945_i0 PRJNA728642 9216 335 1.396947 4.67977245 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 346 1.2899999999999999e-90   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g8945 i0 85.46 3.85671641791045 337 44 100 2 1 335 2423 2756 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1292 346 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
20321299 20321299 PRJNA728642_P_NODE_10616_length_311_cov_1.382353_g10345_i0 PRJNA728642 10616 311 1.382353 4.29911783 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 540 5.09e-149   NTclustered gi|529154115|gb|EU266548.2| 500012 g10345 i0 98.077 25.7942122186495 312 3 100 3 1 311 461 152 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 8022 540 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;