RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA728642" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA728642 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9641549 9641549 PRJNA728642_P_NODE_9248_length_334_cov_2.624521_g8977_i0 PRJNA728642 9248 334 2.624521 8.76590014 Ripella sp. 805 1217113 Discosea other_Eukaryota 531 3.32e-146   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g8977 i0 95.252 101.835329341317 337 12 100 3 1 334 12 347 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 34013 531 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
10917086 10917086 PRJNA728642_P_NODE_9109_length_337_cov_1.166667_g8838_i0 PRJNA728642 9109 337 1.166667 3.93166779 Fuligo septica 159720 Evosea other_Eukaryota 75 6.79e-9   NTclustered gi|37515398|emb|AJ584697.1| 159720 g8838 i0 79.279 3.29376854599407 111 20 33 2 1 111 9694 9587 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 1110 75 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
24939442 24939442 PRJNA728642_P_NODE_8040_length_360_cov_1.202091_g7769_i0 PRJNA728642 8040 360 1.202091 4.3275276 Ripella platypodia 2047821 Discosea other_Eukaryota 542 1.66e-149   NTclustered gi|1269228348|gb|MF683473.1| 2047821 g7769 i0 93.939 100.836111111111 363 15 100 7 1 360 1175 1533 Ripella platypodia clone 21702 18S ribosomal RNA gene, partial sequence blastn 36301 542 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;