contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA727760" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2470114 | 2470114 | PRJNA727760_S_NODE_1222_length_422_cov_2.601719_g1194_i0 | PRJNA727760 | 1222 | 422 | 2.601719 | 10.97925418 | root | 1 | Root_unresolved | Root_unresolved | 52.8 | 0.041 | NTclustered | gi|959230911|emb|LN899826.1| | 305 | g1194 | i0 | 100 | 0.265402843601896 | 28 | 0 | 7 | 0 | 1 | 28 | 111808 | 111781 | Ralstonia solanacearum genome assembly 9 genomes, chromosome : VIII | blastn | 112 | 52.8 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Ralstonia | Ralstonia solanacearum | ||
| 3746558 | 3746558 | PRJNA727760_S_NODE_503_length_687_cov_2.333876_g480_i0 | PRJNA727760 | 503 | 687 | 2.333876 | 16.03372812 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 93.5 | 4.04e-14 | NTclustered | gi|2166246132|dbj|LC663124.1| | 1869227 | g480 | i0 | 93.651 | 125.052401746725 | 63 | 2 | 16 | 2 | 1 | 62 | 16 | 77 | Bacterium ARSSAG-00002529 DNA, putative prophage region, clone: 00002529_pp1 | blastn | 85911 | 93.5 | 1 | Bacteria | bacterium | ||||||||
| 4541067 | 4541067 | PRJNA727760_S_NODE_324_length_839_cov_2.039164_g307_i0 | PRJNA727760 | 324 | 839 | 2.039164 | 17.10858596 | Klebsiella pneumoniae | 573 | Bacteria | Bacteria | 75 | 1.8e-8 | NTclustered | gi|2523005509|gb|CP040712.1| | 573 | g307 | i0 | 97.727 | 40.0738974970203 | 44 | 0 | 5 | 1 | 795 | 837 | 254341 | 254298 | Klebsiella pneumoniae strain 16HN-35 plasmid p16HN-35_Vir, complete sequence | blastn | 33622 | 75 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Klebsiella pneumoniae | ||
| 6298852 | 6298852 | PRJNA727760_S_NODE_3345_length_253_cov_1.205556_g3317_i0 | PRJNA727760 | 3345 | 253 | 1.205556 | 3.05005668 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 87.9 | 6.29e-13 | NTclustered | gi|2523005509|gb|CP040712.1| | 573 | g3317 | i0 | 96.296 | 187.03162055336 | 54 | 0 | 21 | 2 | 199 | 251 | 254341 | 254289 | Klebsiella pneumoniae strain 16HN-35 plasmid p16HN-35_Vir, complete sequence | blastn | 47319 | 87.9 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Klebsiella pneumoniae | ||
| 7572640 | 7572640 | PRJNA727760_S_NODE_486_length_700_cov_2.622010_g463_i0 | PRJNA727760 | 486 | 700 | 2.62201 | 18.35407 | Bacteria | 2 | Bacteria | Bacteria | 69.4 | 6.94e-7 | NTclustered | gi|959220006|emb|LN899824.1| | 305 | g463 | i0 | 97.5 | 48.1028571428571 | 40 | 1 | 6 | 0 | 658 | 697 | 5780954 | 5780915 | Ralstonia solanacearum genome assembly 9 genomes, chromosome : VI | blastn | 33672 | 69.4 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Ralstonia | Ralstonia solanacearum | ||
| 8365948 | 8365948 | PRJNA727760_S_NODE_3067_length_263_cov_1.068421_g3039_i0 | PRJNA727760 | 3067 | 263 | 1.068421 | 2.80994723 | Desulfobacteraceae bacterium | 2049433 | Bacteria | Bacteria | 93.5 | 1.41e-14 | NTclustered | gi|2166246725|dbj|LC663157.1| | 2049433 | g3039 | i0 | 96.491 | 184.053231939164 | 57 | 0 | 21 | 2 | 1 | 56 | 6738 | 6683 | Desulfobacteraceae bacterium ARSSAG-00001218 DNA, putative prophage region, clone: 00001218_pp2 | blastn | 48406 | 93.5 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfobacteraceae | Desulfobacteraceae bacterium | |||
| 10916744 | 10916744 | PRJNA727760_S_NODE_1129_length_440_cov_1.299728_g1101_i0 | PRJNA727760 | 1129 | 440 | 1.299728 | 5.7188032 | bacterium | 1869227 | Bacteria | Bacteria | 121 | 1.15e-22 | NTclustered | gi|2166246132|dbj|LC663124.1| | 1869227 | g1101 | i0 | 92.941 | 131.129545454545 | 85 | 3 | 19 | 3 | 358 | 440 | 88 | 5 | Bacterium ARSSAG-00002529 DNA, putative prophage region, clone: 00002529_pp1 | blastn | 57697 | 121 | 1 | Bacteria | bacterium | ||||||||
| 10916747 | 10916747 | PRJNA727760_S_NODE_649_length_607_cov_2.209738_g624_i0 | PRJNA727760 | 649 | 607 | 2.209738 | 13.41310966 | Klebsiella pneumoniae | 573 | Bacteria | Bacteria | 87.9 | 1.65e-12 | NTclustered | gi|2523005509|gb|CP040712.1| | 573 | g624 | i0 | 96.296 | 75.7808896210873 | 54 | 0 | 9 | 2 | 2 | 54 | 254289 | 254341 | Klebsiella pneumoniae strain 16HN-35 plasmid p16HN-35_Vir, complete sequence | blastn | 45999 | 87.9 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Klebsiella pneumoniae | ||
| 16497753 | 16497753 | PRJNA727760_S_NODE_3273_length_255_cov_1.648352_g3245_i0 | PRJNA727760 | 3273 | 255 | 1.648352 | 4.2032976 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 89.8 | 1.77e-13 | NTclustered | gi|2166246132|dbj|LC663124.1| | 1869227 | g3245 | i0 | 96.364 | 188.278431372549 | 55 | 0 | 21 | 2 | 2 | 55 | 24 | 77 | Bacterium ARSSAG-00002529 DNA, putative prophage region, clone: 00002529_pp1 | blastn | 48011 | 89.8 | 1 | Bacteria | bacterium | ||||||||
| 19046596 | 19046596 | PRJNA727760_S_NODE_3655_length_245_cov_1.790698_g3627_i0 | PRJNA727760 | 3655 | 245 | 1.790698 | 4.3872101 | Staphylococcus | 1279 | Bacteria | Bacteria | 453 | 5.1900000000000006e-123 | NTclustered | gi|1899862668|gb|CP061041.1| | 1292 | g3627 | i0 | 100 | 100 | 245 | 0 | 100 | 0 | 1 | 245 | 1658203 | 1658447 | Staphylococcus warneri strain WS479 chromosome, complete genome | blastn | 24500 | 453 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus warneri |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;