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contig_metadata

27 rows where analysis = "blastn", bioproject = "PRJNA727760" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 27 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA727760 · 27 ✖

analysis 1

  • blastn · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1988715 1988715 PRJNA727760_S_NODE_2542_length_285_cov_2.042453_g2514_i0 PRJNA727760 2542 285 2.042453 5.82099105 Bos taurus 9913 Chordata Chordata 527 3.59e-145   NTclustered gi|74267716|gb|BC102476.1| 9913 g2514 i0 100 98.5894736842105 285 0 100 0 1 285 881 597 Bos taurus ribosomal protein S4, Y-linked 2, mRNA (cDNA clone MGC:127573 IMAGE:7950762), complete cds blastn 28098 527 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
2470115 2470115 PRJNA727760_S_NODE_3202_length_258_cov_1.167568_g3174_i0 PRJNA727760 3202 258 1.167568 3.01232544 Bos 9903 Chordata Chordata 477 3.2699999999999985e-130   NTclustered gi|2633875232|ref|XM_061420459.1| 9906 g3174 i0 100 40.031007751938 258 0 100 0 1 258 838 581 PREDICTED: Bos javanicus platelet factor 4 (LOC133249695), mRNA blastn 10328 477 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
3263977 3263977 PRJNA727760_S_NODE_2363_length_295_cov_1.405405_g2335_i0 PRJNA727760 2363 295 1.405405 4.14594475 Bos taurus 9913 Chordata Chordata 525 1.3399999999999995e-144   NTclustered gi|83035070|ref|NM_001037606.1| 9913 g2335 i0 99.31 27.3525423728814 290 2 98 0 6 295 2538 2249 Bos taurus FERM domain containing kindlin 3 (FERMT3), mRNA blastn 8069 525 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
5816326 5816326 PRJNA727760_S_NODE_2045_length_318_cov_3.134694_g2017_i0 PRJNA727760 2045 318 3.134694 9.96832692 Bos taurus 9913 Chordata Chordata 582 8.549999999999998e-162   NTclustered gi|2587625076|ref|XM_002691119.5| 9913 g2017 i0 99.686 32.1383647798742 318 1 100 0 1 318 570 887 PREDICTED: Bos taurus beta-2-microglobulin (LOC783680), mRNA blastn 10220 582 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
6298851 6298851 PRJNA727760_S_NODE_2665_length_279_cov_6.014563_g2637_i0 PRJNA727760 2665 279 6.014563 16.78063077 Bovidae 9895 Chordata Chordata 512 9.81e-141   NTclustered gi|2633864476|ref|XM_061416859.1| 9906 g2637 i0 100 82.1075268817204 277 0 99 0 3 279 4974 5250 PREDICTED: Bos javanicus proliferation-associated 2G4 (PA2G4), mRNA blastn 22908 512 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
7091421 7091421 PRJNA727760_S_NODE_3386_length_252_cov_0.871508_g3358_i0 PRJNA727760 3386 252 0.871508 2.19620016 Bubalus kerabau 3119969 Chordata Chordata 340 4.359999999999999e-89   NTclustered gi|2496504328|ref|XM_055588155.1| 3119969 g3358 i0 91.498 49.281746031746 247 21 98 0 6 252 725 479 PREDICTED: Bubalus kerabau coiled-coil domain containing 149 (CCDC149), transcript variant X3, mRNA blastn 12419 340 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bubalus Bubalus kerabau
8847850 8847850 PRJNA727760_S_NODE_1547_length_371_cov_2.338926_g1519_i0 PRJNA727760 1547 371 2.338926 8.67741546 Bos 9903 Chordata Chordata 499 1.05e-136   NTclustered gi|2633783691|ref|XM_061391169.1| 9906 g1519 i0 100 66.1374663072776 270 0 73 0 102 371 266 535 PREDICTED: Bos javanicus ATP synthase inhibitory factor subunit 1 (ATP5IF1), mRNA blastn 24537 499 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
8847851 8847851 PRJNA727760_S_NODE_3667_length_245_cov_1.284884_g3639_i0 PRJNA727760 3667 245 1.284884 3.1479658 Bos 9903 Chordata Chordata 453 5.1900000000000006e-123   NTclustered gi|2878346856|ref|XM_019959491.2| 9915 g3639 i0 100 93.8489795918367 245 0 100 0 1 245 1124 1368 PREDICTED: Bos indicus N-6 adenine-specific DNA methyltransferase 1 (N6AMT1), transcript variant X2, mRNA blastn 22993 453 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus
10123322 10123322 PRJNA727760_S_NODE_1868_length_334_cov_1.494253_g1840_i0 PRJNA727760 1868 334 1.494253 4.99080502 Bovidae 9895 Chordata Chordata 612 1.15e-170   NTclustered gi|2633736696|ref|XR_009729795.1| 9906 g1840 i0 99.701 9.93712574850299 334 1 100 0 1 334 40 373 PREDICTED: Bos javanicus uncharacterized LOC133227321 (LOC133227321), ncRNA blastn 3319 617 0.991896272285251 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
10123323 10123323 PRJNA727760_S_NODE_4048_length_211_cov_4.318841_g4020_i0 PRJNA727760 4048 211 4.318841 9.11275451 Bovidae 9895 Chordata Chordata 390 3.459999999999999e-104   NTclustered gi|2633823911|ref|XM_061405013.1| 9906 g4020 i0 100 95.0047393364929 211 0 100 0 1 211 1405 1615 PREDICTED: Bos javanicus FXYD domain containing ion transport regulator 4 (FXYD4), transcript variant X2, mRNA blastn 20046 390 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
11398448 11398448 PRJNA727760_S_NODE_1469_length_381_cov_1.266234_g1441_i0 PRJNA727760 1469 381 1.266234 4.82435154 Bos 9903 Chordata Chordata 704 0   NTclustered gi|2633718985|ref|XM_061436902.1| 9906 g1441 i0 100 87.1837270341207 381 0 100 0 1 381 462 842 PREDICTED: Bos javanicus pancreatic progenitor cell differentiation and proliferation factor (PPDPF), transcript variant X1, mRNA blastn 33217 704 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
12674370 12674370 PRJNA727760_S_NODE_3410_length_251_cov_1.308989_g3382_i0 PRJNA727760 3410 251 1.308989 3.28556239 Bos 9903 Chordata Chordata 464 2.47e-126   NTclustered gi|2587628505|ref|XM_024999576.2| 9913 g3382 i0 100 67.0717131474104 251 0 100 0 1 251 4110 4360 PREDICTED: Bos taurus multivesicular body subunit 12B (MVB12B), transcript variant X3, mRNA blastn 16835 464 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
13466416 13466416 PRJNA727760_S_NODE_3791_length_243_cov_0.917647_g3763_i0 PRJNA727760 3791 243 0.917647 2.22988221 Dama dama 30532 Chordata Chordata 270 5.5499999999999986e-68   NTclustered gi|2625347374|ref|XM_061133207.1| 30532 g3763 i0 86.694 118.609053497942 248 28 100 4 1 243 463 710 PREDICTED: Dama dama glutamine amidotransferase-like class 1 domain-containing protein 3, mitochondrial (LOC133049239), transcript variant X1, mRNA blastn 28822 270 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Dama Dama dama
13948673 13948673 PRJNA727760_S_NODE_3251_length_256_cov_1.278689_g3223_i0 PRJNA727760 3251 256 1.278689 3.27344384 Bovidae 9895 Chordata Chordata 473 4.189999999999999e-129   NTclustered gi|74267881|gb|BC103265.1| 9913 g3223 i0 100 51.64453125 256 0 100 0 1 256 933 1188 Bos taurus ribosomal L24 domain containing 1, mRNA (cDNA clone MGC:128501 IMAGE:7984661), complete cds blastn 13221 473 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
16497752 16497752 PRJNA727760_S_NODE_3133_length_260_cov_1.251337_g3105_i0 PRJNA727760 3133 260 1.251337 3.2534762 Bos 9903 Chordata Chordata 481 2.55e-131   NTclustered gi|2587632039|ref|XM_005214891.5| 9913 g3105 i0 100 73.1653846153846 260 0 100 0 1 260 802 1061 PREDICTED: Bos taurus mannosidase beta like (MANBAL), transcript variant X8, mRNA blastn 19023 481 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
17772591 17772591 PRJNA727760_S_NODE_3594_length_247_cov_0.885057_g3566_i0 PRJNA727760 3594 247 0.885057 2.18609079 Bos 9903 Chordata Chordata 425 1.14e-114   NTclustered gi|154426063|gb|BC151476.1| 9913 g3566 i0 97.959 24.7287449392713 245 5 99 0 1 245 574 818 Bos taurus ribosomal protein L39, mRNA (cDNA clone MGC:179345 IMAGE:8459215), complete cds blastn 6108 429 0.990675990675991 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
19046595 19046595 PRJNA727760_S_NODE_3035_length_264_cov_1.225131_g3007_i0 PRJNA727760 3035 264 1.225131 3.23434584 Bovidae 9895 Chordata Chordata 368 2.11e-97   NTclustered gi|2633783691|ref|XM_061391169.1| 9906 g3007 i0 100 58.3371212121212 199 0 100 0 66 264 303 105 PREDICTED: Bos javanicus ATP synthase inhibitory factor subunit 1 (ATP5IF1), mRNA blastn 15401 368 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
19046597 19046597 PRJNA727760_S_NODE_3715_length_244_cov_1.491228_g3687_i0 PRJNA727760 3715 244 1.491228 3.63859632 Bos 9903 Chordata Chordata 451 1.86e-122   NTclustered gi|402745082|ref|NM_001040601.2| 9913 g3687 i0 100 99.4754098360656 244 0 100 0 1 244 1373 1130 Bos taurus Ras suppressor protein 1 (RSU1), mRNA blastn 24272 451 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
19046598 19046598 PRJNA727760_S_NODE_3835_length_242_cov_0.923077_g3807_i0 PRJNA727760 3835 242 0.923077 2.23384634 Bos 9903 Chordata Chordata 448 2.3799999999999995e-121   NTclustered gi|2587676091|ref|XM_005203514.5| 9913 g3807 i0 100 70.2561983471074 242 0 100 0 1 242 1820 2061 PREDICTED: Bos taurus lymphocyte antigen 9 (LY9), transcript variant X7, mRNA blastn 17002 448 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
19839635 19839635 PRJNA727760_S_NODE_3536_length_248_cov_1.725714_g3508_i0 PRJNA727760 3536 248 1.725714 4.27977072 Bos indicus x Bos taurus 30522 Chordata Chordata 459 1.13e-124   NTclustered gi|1542866041|ref|XM_027552743.1| 30522 g3508 i0 100 25.3629032258065 248 0 100 0 1 248 833 1080 PREDICTED: Bos indicus x Bos taurus beta-2-microglobulin (LOC113899278), mRNA blastn 6290 459 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus x Bos taurus
20321284 20321284 PRJNA727760_S_NODE_2256_length_302_cov_2.388646_g2228_i0 PRJNA727760 2256 302 2.388646 7.21371092 Bos 9903 Chordata Chordata 558 1.36e-154   NTclustered gi|2633912745|ref|XM_061408974.1| 9906 g2228 i0 100 99.9470198675497 302 0 100 0 1 302 397 698 PREDICTED: Bos javanicus signal sequence receptor subunit 4 (SSR4), transcript variant X1, mRNA blastn 30184 558 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
20321285 20321285 PRJNA727760_S_NODE_3916_length_232_cov_2.452830_g3888_i0 PRJNA727760 3916 232 2.45283 5.6905656 Bos 9903 Chordata Chordata 429 8.2e-116   NTclustered gi|330417894|ref|NM_001206473.1| 9913 g3888 i0 100 55.9224137931034 232 0 100 0 1 232 982 751 Bos taurus ubiquitin D (UBD), mRNA blastn 12974 429 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
21115259 21115259 PRJNA727760_S_NODE_1477_length_380_cov_1.315961_g1449_i0 PRJNA727760 1477 380 1.315961 5.0006518 Bos mutus 72004 Chordata Chordata 669 0   NTclustered gi|2868755517|ref|XM_070387904.1| 72004 g1449 i0 98.677 67.2894736842105 378 3 99 2 2 379 3744 4119 PREDICTED: Bos mutus ZFP14 zinc finger protein (ZFP14), transcript variant X1, mRNA blastn 25570 669 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
21596994 21596994 PRJNA727760_S_NODE_2877_length_270_cov_1.187817_g2849_i0 PRJNA727760 2877 270 1.187817 3.2071059 Bovidae 9895 Chordata Chordata 499 7.349999999999998e-137   NTclustered gi|2633736623|ref|XM_061381705.1| 9906 g2849 i0 100 91.8740740740741 270 0 100 0 1 270 2825 2556 PREDICTED: Bos javanicus RAB GTPase activating protein 1 like (RABGAP1L), transcript variant X2, mRNA blastn 24806 499 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
22390137 22390137 PRJNA727760_S_NODE_2978_length_266_cov_1.968912_g2950_i0 PRJNA727760 2978 266 1.968912 5.23730592 Bos indicus 9915 Chordata Chordata 492 1.2099999999999999e-134   NTclustered gi|2878387248|ref|XM_019972473.2| 9915 g2950 i0 100 54.8834586466165 266 0 100 0 1 266 924 659 PREDICTED: Bos indicus spleen trypsin inhibitor I (LOC109567490), mRNA blastn 14599 492 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus
22872314 22872314 PRJNA727760_S_NODE_3278_length_255_cov_1.285714_g3250_i0 PRJNA727760 3278 255 1.285714 3.2785707 Bos 9903 Chordata Chordata 472 1.5e-128   NTclustered gi|2633811595|ref|XM_061400928.1| 9906 g3250 i0 100 99.4235294117647 255 0 100 0 1 255 129 383 PREDICTED: Bos javanicus elongin B (ELOB), mRNA blastn 25353 472 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
25421380 25421380 PRJNA727760_S_NODE_3460_length_250_cov_0.881356_g3432_i0 PRJNA727760 3460 250 0.881356 2.20339 Bos 9903 Chordata Chordata 462 8.83e-126   NTclustered gi|1398977718|gb|MF169213.1| 9909 g3432 i0 100 100 250 0 100 0 1 250 8877 8628 Bos primigenius isolate Horn_CMLIX mitochondrion, partial genome blastn 25000 462 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos primigenius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;