RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA725806" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA725806 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
711742 711742 PRJNA725806_P_NODE_139421_length_174_cov_0.992701_g139119_i0 PRJNA725806 139421 174 0.99270099999999994 1.72729974 Luteolibacter luteus 2728835 Bacteria Bacteria 255 1.04e-63   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g139119 i0 97.333 220.465517241379 150 4 86 0 25 174 3803514 3803663 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 38361 255 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
8365182 8365182 PRJNA725806_P_NODE_327_length_1066_cov_7.145773_g236_i0 PRJNA725806 327 1066 7.145773 76.17394018 Luteolibacter luteus 2728835 Bacteria Bacteria 1799 0   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g236 i0 98.066 278.549718574109 1034 20 97 0 14 1047 3804911 3803878 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 296934 1799 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
13465644 13465644 PRJNA725806_P_NODE_30911_length_285_cov_1.552419_g30614_i0 PRJNA725806 30911 285 1.552419 4.42439415 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 488 1.6899999999999999e-133   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g30614 i0 97.544 92.7543859649123 285 7 100 0 1 285 623 907 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 26435 488 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;