RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA725806" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA725806 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3746231 3746231 PRJNA725806_P_NODE_40123_length_265_cov_2.885965_g39826_i0 PRJNA725806 40123 265 2.885965 7.64780725 Leptospira 171 Bacteria Bacteria 56.5 0.002   NTclustered gi|1464599676|gb|CP030142.1| 1137606 g39826 i0 100 0.452830188679245 30 0 11 0 117 146 2371262 2371233 Leptospira mayottensis strain VS2413 chromosome I, complete sequence blastn 120 56.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira mayottensis
3746321 3746321 PRJNA725806_P_NODE_99763_length_197_cov_6.081250_g99461_i0 PRJNA725806 99763 197 6.08125 11.9800625 Leptospira 171 Bacteria Bacteria 52.8 0.017   NTclustered gi|2612877174|gb|CP136243.1| 173 g99461 i0 100 1.91370558375635 28 0 14 0 130 157 1506238 1506265 Leptospira interrogans strain CUDO5 chromosome I, complete sequence blastn 377 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira interrogans
7572168 7572168 PRJNA725806_P_NODE_115666_length_187_cov_1.460000_g115364_i0 PRJNA725806 115666 187 1.46 2.7302 Brachyspira 29521 Bacteria Bacteria 54.7 0.004   NTclustered gi|404436164|gb|CP003490.1| 1133568 g115364 i0 90.698 0.459893048128342 43 1 22 3 9 50 1088570 1088530 Brachyspira pilosicoli B2904, complete genome blastn 86 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira pilosicoli
9640468 9640468 PRJNA725806_P_NODE_5368_length_435_cov_2.567839_g5090_i0 PRJNA725806 5368 435 2.567839 11.17009965 Borreliella afzelii 29518 Bacteria Bacteria 52.8 0.042   NTclustered gi|110891129|gb|CP000399.1| 390236 g5090 i0 100 0.128735632183908 28 0 6 0 230 257 4108 4081 Borrelia afzelii PKo plasmid lp32, complete sequence blastn 56 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella afzelii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;