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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA725806" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA725806 · 18 ✖

analysis 1

  • blastn · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
711892 711892 PRJNA725806_P_NODE_46361_length_254_cov_5.741935_g46064_i0 PRJNA725806 46361 254 5.741935 14.5845149 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.002   NTclustered gi|687022701|emb|LM525615.1| 174720 g46064 i0 100 0.118110236220472 30 0 12 0 121 150 124200 124229 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000025 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
1987883 1987883 PRJNA725806_P_NODE_29962_length_287_cov_3.348000_g29665_i0 PRJNA725806 29962 287 3.348 9.60876 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.027   NTclustered gi|687022642|emb|LM525556.1| 174720 g29665 i0 100 0.0975609756097561 28 0 10 0 129 156 1284322 1284349 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000002 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
3263023 3263023 PRJNA725806_P_NODE_117103_length_186_cov_2.093960_g116801_i0 PRJNA725806 117103 186 2.09396 3.8947656 Caenorhabditis elegans 6239 Nematoda Nematoda 78.7 2.6200000000000003e-10   NTclustered gi|687865803|emb|LK927963.1| 6239 g116801 i0 78.462 2.52688172043011 130 20 67 6 62 186 10680 10806 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000367 blastn 470 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
4540379 4540379 PRJNA725806_P_NODE_73524_length_219_cov_10.351648_g73223_i0 PRJNA725806 73524 219 10.351648 22.67010912 Brugia malayi 6279 Nematoda Nematoda 152 1.8599999999999998e-32   NTclustered gi|2082293650|ref|XM_043074288.1| 6279 g73223 i0 86.331 3.87671232876712 139 19 63 0 36 174 10474 10612 Brugia malayi Start codon is not identified, putative (Bma-eel-1), partial mRNA blastn 849 152 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
5815517 5815517 PRJNA725806_P_NODE_49345_length_249_cov_8.773585_g49048_i0 PRJNA725806 49345 249 8.773585 21.84622665 Trichinella spiralis 6334 Nematoda Nematoda 56.5 0.002   NTclustered gi|104295117|gb|AC187040.1| 6334 g49048 i0 100 0.457831325301205 30 0 12 0 23 52 65333 65362 Trichinella spiralis chromosome UNK clone TS195-35H12, complete sequence blastn 114 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
7090674 7090674 PRJNA725806_P_NODE_52326_length_245_cov_3.495192_g52029_i0 PRJNA725806 52326 245 3.495192 8.5632204 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.022   NTclustered gi|690018488|emb|LM525726.1| 174720 g52029 i0 100 0.114285714285714 28 0 11 0 160 187 47559 47532 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000121 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
8364993 8364993 PRJNA725806_P_NODE_101487_length_196_cov_4.025157_g101185_i0 PRJNA725806 101487 196 4.025157 7.88930772 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.001   NTclustered gi|373218521|emb|FO080101.1| 6239 g101185 i0 92.5 0.408163265306122 40 2 20 1 22 61 24879 24917 Caenorhabditis elegans Cosmid C27A12, complete sequence blastn 80 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8365181 8365181 PRJNA725806_P_NODE_32207_length_282_cov_1.216327_g31910_i0 PRJNA725806 32207 282 1.216327 3.43004214 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.026   NTclustered gi|687022679|emb|LM525593.1| 174720 g31910 i0 100 0.099290780141844 28 0 10 0 17 44 144087 144114 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000027 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
8365237 8365237 PRJNA725806_P_NODE_60507_length_234_cov_4.934010_g60209_i0 PRJNA725806 60507 234 4.93401 11.5455834 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.006   NTclustered gi|1767288484|ref|NM_001029151.4| 6239 g60209 i0 90.698 0.551282051282051 43 1 18 3 88 129 1403 1443 Caenorhabditis elegans DUF148 domain-containing protein (B0403.5), mRNA blastn 129 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9640364 9640364 PRJNA725806_P_NODE_189508_length_152_cov_3.078261_g189206_i0 PRJNA725806 189508 152 3.078261 4.67895672 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.012   NTclustered gi|690018493|emb|LM525731.1| 174720 g189206 i0 100 0.184210526315789 28 0 18 0 44 71 26366 26339 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000053 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10915991 10915991 PRJNA725806_P_NODE_5229_length_437_cov_10.212500_g4951_i0 PRJNA725806 5229 437 10.2125 44.628625 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.042   NTclustered gi|690021316|emb|LM529018.1| 174720 g4951 i0 100 0.0640732265446224 28 0 6 0 350 377 862 889 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003337 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
17289722 17289722 PRJNA725806_P_NODE_11034_length_366_cov_4.392097_g10746_i0 PRJNA725806 11034 366 4.392097 16.07507502 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.035   NTclustered gi|687865763|emb|LK927532.1| 6239 g10746 i0 100 0.153005464480874 28 0 8 0 121 148 301374 301401 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000003 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18563666 18563666 PRJNA725806_P_NODE_4455_length_454_cov_5.201439_g4181_i0 PRJNA725806 4455 454 5.201439 23.61453306 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.044   NTclustered gi|687865440|emb|LK927606.1| 6239 g4181 i0 100 0.123348017621145 28 0 6 0 48 75 159473 159446 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000071 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19838982 19838982 PRJNA725806_P_NODE_99456_length_197_cov_11.143750_g99154_i0 PRJNA725806 99456 197 11.14375 21.9531875 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.001   NTclustered gi|412977122|emb|AL132898.3| 6239 g99154 i0 100 0.304568527918782 30 0 15 0 100 129 104662 104633 Caenorhabditis elegans YAC Y59A8B, complete sequence blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
21114309 21114309 PRJNA725806_P_NODE_126157_length_180_cov_15.000000_g125855_i0 PRJNA725806 126157 180 15 27 Caenorhabditis briggsae 6238 Nematoda Nematoda 62.1 2.54e-5   NTclustered gi|2158422651|ref|XM_045237862.1| 6238 g125855 i0 94.872 0.433333333333333 39 2 22 0 72 110 1573 1535 Caenorhabditis briggsae Protein CBR-MEC-1 (Cbr-mec-1), partial mRNA blastn 78 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
22389407 22389407 PRJNA725806_P_NODE_67978_length_225_cov_6.441489_g67677_i0 PRJNA725806 67978 225 6.441489 14.49335025 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 4.3e-4   NTclustered gi|687022696|emb|LM525610.1| 174720 g67677 i0 94.737 0.168888888888889 38 1 16 1 174 210 27990 28027 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000020 blastn 38 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
22389477 22389477 PRJNA725806_P_NODE_91358_length_204_cov_1.520958_g91056_i0 PRJNA725806 91358 204 1.520958 3.10275432 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.001   NTclustered gi|412976773|emb|AL032654.2| 6239 g91056 i0 96.97 0.308823529411765 33 1 16 0 79 111 71348 71316 Caenorhabditis elegans YAC Y52B11A, complete sequence blastn 63 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23664783 23664783 PRJNA725806_P_NODE_137139_length_175_cov_1.608696_g136837_i0 PRJNA725806 137139 175 1.608696 2.815218 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.015   NTclustered gi|690018606|emb|LM525844.1| 174720 g136837 i0 100 0.16 28 0 16 0 57 84 20243 20216 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000223 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;