contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA725806" and tax_phylum = "Chloroflexota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6298393 | 6298393 | PRJNA725806_P_NODE_12725_length_354_cov_5.113565_g12435_i0 | PRJNA725806 | 12725 | 354 | 5.113565 | 18.1020201 | Bacillati | 1783272 | Bacteria | Bacteria | 52.8 | 0.033 | NTclustered | gi|156231356|gb|CP000804.1| | 383372 | g12435 | i0 | 100 | 0.15819209039548 | 28 | 0 | 8 | 0 | 231 | 258 | 3946681 | 3946708 | Roseiflexus castenholzii DSM 13941, complete genome | blastn | 56 | 52.8 | 1 | Bacteria | Bacillati | Chloroflexota | Chloroflexia | Chloroflexales | Roseiflexaceae | Roseiflexus | Roseiflexus castenholzii | ||
| 12191254 | 12191254 | PRJNA725806_P_NODE_43510_length_259_cov_3.099099_g43213_i0 | PRJNA725806 | 43510 | 259 | 3.099099 | 8.02666641 | Leptolinea sp. HRD-7 | 2830982 | Bacteria | Bacteria | 52.8 | 0.024 | NTclustered | gi|2250018340|dbj|AP024710.1| | 2830982 | g43213 | i0 | 100 | 0.108108108108108 | 28 | 0 | 11 | 0 | 64 | 91 | 1563839 | 1563866 | Leptolinea sp. HRD-7 DNA, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Chloroflexota | Anaerolineae | Anaerolineales | Anaerolineaceae | Leptolinea | Leptolinea sp. HRD-7 | ||
| 13465610 | 13465610 | PRJNA725806_P_NODE_196331_length_150_cov_1.132743_g196029_i0 | PRJNA725806 | 196331 | 150 | 1.132743 | 1.6991145 | Ktedonobacteria bacterium brp13 | 2717365 | Bacteria | Bacteria | 200 | 4.119999999999999e-47 | NTclustered | gi|1915456248|dbj|AP024096.1| | 2717365 | g196029 | i0 | 92.254 | 19.48 | 142 | 10 | 95 | 1 | 9 | 150 | 792780 | 792640 | Ktedonobacteria bacterium brp13 DNA, complete genome | blastn | 2922 | 200 | 1 | Bacteria | Bacillati | Chloroflexota | Ktedonobacteria | Ktedonobacteria bacterium brp13 | |||||
| 18563453 | 18563453 | PRJNA725806_P_NODE_110995_length_190_cov_1.235294_g110693_i0 | PRJNA725806 | 110995 | 190 | 1.235294 | 2.3470586 | Thermosporothrix sp. COM3 | 2490863 | Bacteria | Bacteria | 261 | 2.49e-65 | NTclustered | gi|1606557374|dbj|AP019376.1| | 2490863 | g110693 | i0 | 93.714 | 229.863157894737 | 175 | 9 | 92 | 2 | 17 | 190 | 3565269 | 3565096 | Thermosporothrix sp. COM3 DNA, nearly complete genome | blastn | 43674 | 261 | 1 | Bacteria | Bacillati | Chloroflexota | Ktedonobacteria | Ktedonobacterales | Thermosporotrichaceae | Thermosporothrix | Thermosporothrix sp. COM3 | ||
| 23664840 | 23664840 | PRJNA725806_P_NODE_177379_length_157_cov_1.300000_g177077_i0 | PRJNA725806 | 177379 | 157 | 1.3 | 2.041 | uncultured Chloroflexia bacterium | 1672391 | Bacteria | Bacteria | 148 | 1.61e-31 | NTclustered | gi|2874253706|emb|OY969433.1| | 1672391 | g177077 | i0 | 85.034 | 8.47770700636943 | 147 | 21 | 93 | 1 | 1 | 146 | 1067519 | 1067373 | MAG: uncultured Chloroflexia bacterium isolate MFD00008.bin.1.123 genome assembly, chromosome: 1 | blastn | 1331 | 148 | 1 | Bacteria | Bacillati | Chloroflexota | Chloroflexia | uncultured Chloroflexia bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;