RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA725806" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA725806 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3262990 3262990 PRJNA725806_P_NODE_103163_length_195_cov_2.740506_g102861_i0 PRJNA725806 103163 195 2.740506 5.3439867 Fusobacteria bacterium ZRK30 2970471 Bacteria Bacteria 52.8 0.017   NTclustered gi|2284595238|gb|CP102405.1| 2970471 g102861 i0 100 0.143589743589744 28 0 14 0 5 32 734620 734647 Fusobacteria bacterium ZRK30 chromosome 2, complete sequence blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteria bacterium ZRK30
8847492 8847492 PRJNA725806_P_NODE_387_length_999_cov_5.048857_g289_i0 PRJNA725806 387 999 5.048857 50.43808143 Leptotrichia 32067 Bacteria Bacteria 1801 0   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g289 i0 99.495 470.099099099099 990 5 99 0 10 999 197259 198248 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 469629 1801 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
9640542 9640542 PRJNA725806_P_NODE_85868_length_208_cov_4.959064_g85567_i0 PRJNA725806 85868 208 4.959064 10.31485312 Leptotrichia alba 3239304 Bacteria Bacteria 54.7 0.005   NTclustered gi|2785244533|gb|CP165647.1| 3239304 g85567 i0 96.97 0.158653846153846 33 0 15 1 106 137 940464 940496 Leptotrichia sp. HSP-536 chromosome, complete genome blastn 33 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia alba
12674068 12674068 PRJNA725806_P_NODE_57450_length_238_cov_3.840796_g57153_i0 PRJNA725806 57450 238 3.840796 9.14109448 Fusobacterium 848 Bacteria Bacteria 52.8 0.021   NTclustered gi|1370537877|gb|CP028108.1| 860 g57153 i0 100 0.352941176470588 28 0 12 0 82 109 193100 193073 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 84 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
21114465 21114465 PRJNA725806_P_NODE_33617_length_278_cov_7.941909_g33320_i0 PRJNA725806 33617 278 7.941909 22.07850702 Ilyobacter polytropus 167642 Bacteria Bacteria 52.8 0.026   NTclustered gi|309749018|gb|CP002282.1| 572544 g33320 i0 100 0.100719424460432 28 0 10 0 209 236 206102 206129 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter polytropus
23665016 23665016 PRJNA725806_P_NODE_76259_length_217_cov_2.438889_g75958_i0 PRJNA725806 76259 217 2.438889 5.29238913 Leptotrichia wadei 157687 Bacteria Bacteria 52.8 0.019   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g75958 i0 100 0.387096774193548 28 0 13 0 53 80 1907276 1907303 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 84 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
25421108 25421108 PRJNA725806_P_NODE_800_length_762_cov_10.456552_g642_i0 PRJNA725806 800 762 10.456552 79.67892624 Fusobacterium 848 Bacteria Bacteria 1373 0   NTclustered gi|2706496642|gb|CP084152.1| 76857 g642 i0 99.733 467.02624671916 749 2 98 0 1 749 753682 754430 Fusobacterium polymorphum strain KCOM2594 chromosome, complete genome blastn 355874 1373 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;