RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA724039" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA724039 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3262333 3262333 PRJNA724039_S_NODE_10983_length_195_cov_0.987342_g10776_i0 PRJNA724039 10983 195 0.987342 1.9253169 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 139 1.26e-28   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g10776 i0 85.401 68.2 137 16 69 4 35 169 41659 41793 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 13299 139 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
7090014 7090014 PRJNA724039_S_NODE_7426_length_245_cov_3.745192_g7219_i0 PRJNA724039 7426 245 3.745192 9.1757204 Peronosclerospora sorghi 230839 SAR_Eukaryotes SAR_Eukaryotes 108 4.65e-19   NTclustered gi|2431515601|ref|NC_070108.1| 230839 g7219 i0 80.282 61.3632653061225 142 28 58 0 54 195 2157 2016 Peronosclerospora sorghi isolate P6 mitochondrion, complete genome blastn 15034 108 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronosclerospora Peronosclerospora sorghi
8364579 8364579 PRJNA724039_S_NODE_8007_length_234_cov_3.629442_g7800_i0 PRJNA724039 8007 234 3.629442 8.49289428 Phytophthora sp. ML-2023a 3044284 SAR_Eukaryotes SAR_Eukaryotes 137 5.62e-28   NTclustered gi|2500404807|gb|OQ735416.1| 3044284 g7800 i0 82.609 3.27350427350427 161 23 67 5 38 194 5943 6102 Phytophthora sp. ML-2023a voucher AM18FRL12 mitochondrion, complete genome blastn 766 137 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. ML-2023a
23664301 23664301 PRJNA724039_S_NODE_8119_length_232_cov_5.317949_g7912_i0 PRJNA724039 8119 232 5.317949 12.33764168 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 122 1.56e-23   NTclustered gi|269812125|gb|GU138663.1| 2052682 g7912 i0 76.923 16.4137931034483 234 42 98 10 1 228 34664 34891 Pythium ultimum culture-collection CBS:398.51 mitochondrion, complete genome blastn 3808 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
24145750 24145750 PRJNA724039_S_NODE_8659_length_223_cov_4.225806_g8452_i0 PRJNA724039 8659 223 4.225806 9.42354738 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 115 2.4900000000000004e-21   NTclustered gi|58202010|gb|AY898628.1| 4787 g8452 i0 91.765 39.2511210762332 85 4 38 3 2 85 2385 2467 Phytophthora infestans haplotype IIb mitochondrion, complete genome blastn 8753 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
24937768 24937768 PRJNA724039_S_NODE_7220_length_250_cov_1.737089_g7013_i0 PRJNA724039 7220 250 1.737089 4.3427225 Synchrospora medusiformis 3033745 SAR_Eukaryotes SAR_Eukaryotes 239 1.62e-58   NTclustered gi|2499019046|gb|OQ605381.1| 3033745 g7013 i0 84 98.512 250 38 99 2 1 249 573 325 Synchrospora medusiformis isolate PA228 beta-tubulin (btub) gene, partial cds blastn 24628 239 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Synchrospora Synchrospora medusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;