RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA724039" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724039 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7090036 7090036 PRJNA724039_S_NODE_8326_length_229_cov_3.682292_g8119_i0 PRJNA724039 8326 229 3.682292 8.43244868 Oscheius tipulae 141969 Nematoda Nematoda 252 1.88e-62   NTclustered gi|62866514|gb|AY928339.1| 141969 g8119 i0 86.463 99.1659388646288 229 31 100 0 1 229 341 113 Oscheius tipulae clone pA1 eukaryotic translation elongation factor 1A (eft-2) mRNA, complete cds blastn 22709 252 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
14740123 14740123 PRJNA724039_S_NODE_12512_length_181_cov_3.104167_g12305_i0 PRJNA724039 12512 181 3.104167 5.61854227 Paracanthonchus caecus 73922 Nematoda Nematoda 169 1.4599999999999998e-37   NTclustered gi|2130729776|gb|OL416396.1| 73922 g12305 i0 83.516 123.309392265193 182 28 100 2 1 181 2782 2962 Paracanthonchus caecus isolate Pc-OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 22319 169 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Cyatholaimidae Paracanthonchus Paracanthonchus caecus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;