RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA724039" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724039 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3262534 3262534 PRJNA724039_S_NODE_5663_length_291_cov_1.811024_g5456_i0 PRJNA724039 5663 291 1.811024 5.27007984 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 152 2.58e-32   NTclustered gi|2893358400|emb|OZ220691.1| 2026742 g5456 i0 83.529 148.199312714777 170 21 57 6 1 165 2518902 2519069 MAG: Gemmatimonadota bacterium isolate 1766b9ea-3269-4cc1-97f5-695b05480569 genome assembly, chromosome: 1 blastn 43126 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
4539643 4539643 PRJNA724039_S_NODE_7344_length_247_cov_3.642857_g7137_i0 PRJNA724039 7344 247 3.642857 8.99785679 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 220 5.78e-53   NTclustered gi|575456455|gb|CP007128.1| 861299 g7137 i0 83.265 188.234817813765 245 35 98 6 4 246 3042716 3042476 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 46494 220 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
4539654 4539654 PRJNA724039_S_NODE_844_length_996_cov_18.532847_g719_i0 PRJNA724039 844 996 18.532847 184.58715612 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 1352 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g719 i0 91.44 145.718875502008 993 74 99 6 6 996 3044222 3043239 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 145136 1352 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7089861 7089861 PRJNA724039_S_NODE_1546_length_638_cov_17.008319_g719_i2 PRJNA724039 1546 638 17.008319 108.51307522 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 863 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g719 i2 91.25 42.5329153605016 640 47 99 8 3 638 3043873 3043239 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 27136 863 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
9639573 9639573 PRJNA724039_S_NODE_1388_length_688_cov_16.897081_g719_i1 PRJNA724039 1388 688 16.897081 116.25191728 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 911 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g719 i1 92.178 35.3880813953488 652 40 94 11 42 688 3043884 3043239 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 24347 911 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
9639777 9639777 PRJNA724039_S_NODE_8848_length_220_cov_9.289617_g8641_i0 PRJNA724039 8848 220 9.289617 20.4371574 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 285 1.7599999999999998e-72   NTclustered gi|575456455|gb|CP007128.1| 861299 g8641 i0 90.09 54.45 222 18 100 4 1 220 3042548 3042329 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 11979 285 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
12190372 12190372 PRJNA724039_S_NODE_1290_length_728_cov_13.030391_g1127_i0 PRJNA724039 1290 728 13.030391 94.86124648 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 918 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g1127 i0 89.581 289.167582417582 739 55 100 18 1 728 3043250 3042523 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 210514 918 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;