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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA724039" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA724039 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4539630 4539630 PRJNA724039_S_NODE_6704_length_262_cov_3.991111_g6497_i0 PRJNA724039 6704 262 3.991111 10.45671082 Gloeomonas rubrifilum 158506 Plants Plants 100 8.42e-17   NTclustered gi|1375380782|dbj|LC360481.1| 158506 g6497 i0 83.186 1.1793893129771 113 15 43 2 137 249 1411 1303 Gloeomonas rubrifilum SAG 3.85 gene for 26S ribosomal RNA, partial sequence blastn 309 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Gloeomonas Gloeomonas rubrifilum
4539674 4539674 PRJNA724039_S_NODE_9644_length_210_cov_1.832370_g9437_i0 PRJNA724039 9644 210 1.83237 3.847977 Chlorella sorokiniana 3076 Plants Plants 104 5.02e-18   NTclustered gi|2323365057|gb|CP084621.1| 3076 g9437 i0 80 0.666666666666667 140 28 67 0 2 141 41745 41884 Chlorella sorokiniana strain SLA-04 mitochondrion, complete genome blastn 140 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
5814747 5814747 PRJNA724039_S_NODE_2625_length_458_cov_22.118765_g2421_i0 PRJNA724039 2625 458 22.118765 101.3039437 Haematococcus lacustris 44745 Plants Plants 641 2.07e-179   NTclustered gi|1279575454|gb|MF683078.1| 44745 g2421 i0 91.974 283.270742358079 461 31 100 5 1 458 3057 2600 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 129738 641 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
12190526 12190526 PRJNA724039_S_NODE_5110_length_309_cov_48.724265_g4903_i0 PRJNA724039 5110 309 48.724265 150.55797885 Haematococcus lacustris 44745 Plants Plants 444 4.07e-120   NTclustered gi|1279575454|gb|MF683078.1| 44745 g4903 i0 94.792 348.168284789644 288 10 92 4 26 309 3401 3115 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 107584 444 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
12190532 12190532 PRJNA724039_S_NODE_5490_length_296_cov_89.571429_g5283_i0 PRJNA724039 5490 296 89.571429 265.13142984 Haematococcus lacustris 44745 Plants Plants 514 2.92e-141   NTclustered gi|1279575454|gb|MF683078.1| 44745 g5283 i0 97.973 275.006756756757 296 6 100 0 1 296 4204 4499 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 81402 514 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
14740233 14740233 PRJNA724039_S_NODE_2712_length_449_cov_27.398058_g2506_i0 PRJNA724039 2712 449 27.398058 123.01728042 Haematococcus lacustris 44745 Plants Plants 634 3.389999999999999e-177   NTclustered gi|1279575454|gb|MF683078.1| 44745 g2506 i0 92.411 294.741648106904 448 29 99 4 1 447 3796 3353 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 132339 634 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
16013638 16013638 PRJNA724039_S_NODE_1573_length_634_cov_21.576214_g1399_i0 PRJNA724039 1573 634 21.576214 136.79319676 Haematococcus lacustris 44745 Plants Plants 717 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g1399 i0 87.363 330.219242902208 641 62 100 17 1 634 2714 2086 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 209359 717 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
16013690 16013690 PRJNA724039_S_NODE_2573_length_463_cov_20.793427_g2369_i0 PRJNA724039 2573 463 20.793427 96.27356701 Haematococcus lacustris 44745 Plants Plants 822 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g2369 i0 98.704 234.654427645788 463 6 100 0 1 463 2600 3062 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 108645 822 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
19045885 19045885 PRJNA724039_S_NODE_10255_length_202_cov_29.460606_g10048_i0 PRJNA724039 10255 202 29.460606 59.51042412 root 1 Root_unresolved Root_unresolved 327 2.61e-85   NTclustered gi|2507491536|dbj|LC749599.1| 51714 g10048 i0 96.04 132.282178217822 202 7 100 1 1 202 112929 112729 Volvox africanus NIES-4468 DNA, SD-like region blastn 26721 327 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
21113626 21113626 PRJNA724039_S_NODE_11637_length_188_cov_34.609272_g11430_i0 PRJNA724039 11637 188 34.609272 65.06543136 Codium simulans 589376 Plants Plants 99 2.04e-16   NTclustered gi|1111669385|ref|NC_032043.1| 589376 g11430 i0 89.024 7.63829787234043 82 6 43 3 83 162 2226 2306 Codium simulans chloroplast, complete genome blastn 1436 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Codiaceae Codium Codium simulans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;