RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724011 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7089180 7089180 PRJNA724011_P_NODE_110346_length_241_cov_0.916667_g109323_i0 PRJNA724011 110346 241 0.916667 2.20916747 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 259 1.19e-64   NTclustered gi|2874253690|emb|OY969416.1| 412056 g109323 i0 86.192 80.4149377593361 239 33 99 0 2 240 1315035 1315273 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 19380 259 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
9639279 9639279 PRJNA724011_P_NODE_65508_length_313_cov_1.204167_g64485_i0 PRJNA724011 65508 313 1.204167 3.76904271 Prosthecobacter debontii 48467 Bacteria Bacteria 529 1.1099999999999996e-145   NTclustered gi|164510703|emb|AJ966882.1| 48467 g64485 i0 97.444 74.6421725239617 313 2 99 5 3 313 3719 3411 Prosthecobacter debontii 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ala gene, tRNA-Ile gene and ITS1, strain DSM 14044 blastn 23363 529 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter debontii
21113263 21113263 PRJNA724011_P_NODE_49477_length_369_cov_1.449324_g48454_i0 PRJNA724011 49477 369 1.449324 5.34800556 Prosthecobacter debontii 48467 Bacteria Bacteria 660 0   NTclustered gi|164510703|emb|AJ966882.1| 48467 g48454 i0 98.916 272.959349593496 369 4 100 0 1 369 4451 4083 Prosthecobacter debontii 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ala gene, tRNA-Ile gene and ITS1, strain DSM 14044 blastn 100722 660 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter debontii
22871387 22871387 PRJNA724011_P_NODE_4438_length_1475_cov_4.764622_g610_i1 PRJNA724011 4438 1475 4.764622 70.2781745 Verrucomicrobiota 74201 Bacteria Bacteria 1445 0   NTclustered gi|183579829|emb|AM905426.1| 320771 g610 i1 85.01 183.989152542373 1461 175 97 38 1 1435 10 1452 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 271384 1459 0.990404386566141 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;