RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA724011 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16013049 16013049 PRJNA724011_P_NODE_28813_length_518_cov_3.602247_g27796_i0 PRJNA724011 28813 518 3.602247 18.65963946 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 54.7 0.014   NTclustered gi|2621705002|emb|OY762289.1| 2049043 g27796 i0 100 0.055984555984556 29 0 6 0 44 72 185351 185379 MAG: Desulfovibrionaceae bacterium isolate 1e2121d5-5174-4668-bae3-9852897706ae genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
19837364 19837364 PRJNA724011_P_NODE_13796_length_827_cov_2.392573_g12870_i0 PRJNA724011 13796 827 2.392573 19.78657871 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 1024 0   NTclustered gi|2575803239|emb|OY729416.1| 2202153 g12870 i0 89.238 397.234582829504 827 78 99 8 2 827 76982 76166 MAG: Thermodesulfobacteriota bacterium isolate ba02c5ff-97d3-4768-ae28-618c4039653d genome assembly, chromosome: 1 blastn 328513 1024 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
21113217 21113217 PRJNA724011_P_NODE_42057_length_408_cov_1.331343_g41034_i0 PRJNA724011 42057 408 1.331343 5.43187944 Pseudodesulfovibrio profundus 57320 Bacteria Bacteria 52.8 0.039   NTclustered gi|1248817418|emb|LT907975.1| 57320 g41034 i0 96.875 0.0784313725490196 32 0 8 1 252 283 13975 14005 Desulfovibrio profundus strain 500-1 genome assembly, chromosome: DPRO blastn 32 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio profundus
23663637 23663637 PRJNA724011_P_NODE_379_length_3611_cov_93.627473_g298_i0 PRJNA724011 379 3611 93.627473 3380.88805003 Pseudodesulfovibrio piezophilus 879567 Bacteria Bacteria 69.4 3.73e-6   NTclustered gi|451894361|emb|FO203427.1| 1322246 g298 i0 78.992 0.759069509831072 119 11 3 10 3347 3455 2361904 2362018 Desulfovibrio piezophilus C1TLV30 complete genome blastn 2741 69.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio piezophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;