RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA724011 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10914854 10914854 PRJNA724011_P_NODE_68949_length_303_cov_1.934783_g67926_i0 PRJNA724011 68949 303 1.934783 5.86239249 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 252 2.59e-62   NTclustered gi|294879533|ref|XM_002768668.1| 423536 g67926 i0 83.774 23.8085808580858 265 43 87 0 5 269 139 403 Perkinsus marinus ATCC 50983 elongation factor Tu, putative, mRNA blastn 7214 252 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
14739510 14739510 PRJNA724011_P_NODE_17052_length_725_cov_236.898773_g16065_i0 PRJNA724011 17052 725 236.898773 1717.51610425 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 198 8.809999999999999e-46   NTclustered gi|294881230|ref|XM_002769261.1| 423536 g16065 i0 76.456 24.2275862068966 412 70 56 24 213 615 444 51 Perkinsus marinus ATCC 50983 60S ribosomal protein L27a, putative, mRNA blastn 17565 198 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
21113187 21113187 PRJNA724011_P_NODE_37777_length_437_cov_3.417582_g36754_i0 PRJNA724011 37777 437 3.417582 14.93483334 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.012   NTclustered gi|294941901|ref|XM_002783251.1| 423536 g36754 i0 100 0.130434782608696 29 0 7 0 29 57 40 68 Perkinsus marinus ATCC 50983 hypothetical protein, conserved, mRNA blastn 57 54.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;