RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724011 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8363749 8363749 PRJNA724011_P_NODE_15867_length_759_cov_2.584548_g14894_i0 PRJNA724011 15867 759 2.584548 19.61671932 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 71.3 2.1e-7   NTclustered gi|585674682|ref|XM_006818589.1| 10224 g14894 i0 100 0.0500658761528327 38 0 5 0 57 94 310 273 PREDICTED: Saccoglossus kowalevskii uncharacterized LOC102804592 (LOC102804592), mRNA blastn 38 71.3 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
18562177 18562177 PRJNA724011_P_NODE_105155_length_244_cov_0.900585_g104132_i0 PRJNA724011 105155 244 0.900585 2.1974274 Ptychodera flava 63121 Hemichordata other_Eukaryota 54.7 0.006   NTclustered gi|2875687023|ref|XM_070676736.1| 63121 g104132 i0 100 0.237704918032787 29 0 12 0 4 32 2079 2107 PREDICTED: Ptychodera flava far upstream element-binding protein 1-like (LOC139114802), transcript variant X2, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
20320256 20320256 PRJNA724011_P_NODE_29236_length_514_cov_1.278912_g28218_i0 PRJNA724011 29236 514 1.278912 6.57360768 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 180 2.21e-40   NTclustered gi|585651795|ref|XM_006814739.1| 10224 g28218 i0 84.831 37.2645914396887 178 27 35 0 337 514 311 134 PREDICTED: Saccoglossus kowalevskii histone H4-like (LOC102804044), mRNA blastn 19154 180 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
23663689 23663689 PRJNA724011_P_NODE_46059_length_385_cov_1.807692_g45036_i0 PRJNA724011 46059 385 1.807692 6.9596142 Ptychodera flava 63121 Hemichordata other_Eukaryota 54.7 0.01   NTclustered gi|2875656297|ref|XM_070713034.1| 63121 g45036 i0 94.444 0.187012987012987 36 0 9 2 340 373 1364 1329 PREDICTED: Ptychodera flava dual specificity protein kinase TTK-like (LOC139142862), transcript variant X1, mRNA blastn 72 54.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;