RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724011 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7571587 7571587 PRJNA724011_P_NODE_109066_length_241_cov_1.738095_g108043_i0 PRJNA724011 109066 241 1.738095 4.18880895 Gemmatimonas 173479 Bacteria Bacteria 335 1.9199999999999993e-87   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g108043 i0 91.77 9.53941908713693 243 17 100 3 1 241 2075999 2076240 Gemmatimonas phototrophica strain AP64, complete genome blastn 2299 335 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
9639424 9639424 PRJNA724011_P_NODE_87428_length_262_cov_2.216931_g86405_i0 PRJNA724011 87428 262 2.216931 5.80835922 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 339 1.64e-88   NTclustered gi|2874253978|emb|OY970303.1| 412054 g86405 i0 92.469 710.477099236641 239 15 90 3 26 262 1904479 1904716 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 186145 339 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18562461 18562461 PRJNA724011_P_NODE_50835_length_363_cov_1.258621_g49812_i0 PRJNA724011 50835 363 1.258621 4.56879423 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 462 1.34e-125   NTclustered gi|2874253978|emb|OY970303.1| 412054 g49812 i0 89.779 53.3250688705234 362 35 99 2 2 363 1903252 1903611 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 19357 462 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;