RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA724011 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7089249 7089249 PRJNA724011_P_NODE_19446_length_668_cov_3.368067_g18440_i0 PRJNA724011 19446 668 3.368067 22.49868756 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 625 3.129999999999999e-174   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g18440 i0 84.603 147.62425149700599 643 84 95 12 1 637 4993331 4992698 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 98613 625 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
7089553 7089553 PRJNA724011_P_NODE_65066_length_314_cov_1.497925_g64043_i0 PRJNA724011 65066 314 1.497925 4.7034845 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 54.7 0.008   NTclustered gi|2893358394|emb|OZ220685.1| 2026734 g64043 i0 100 0.0923566878980892 29 0 9 0 152 180 281169 281141 MAG: Dehalococcoidia bacterium isolate 2a27cef4-6af2-4f96-82a3-29fad4755a7e genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
10914504 10914504 PRJNA724011_P_NODE_21089_length_633_cov_2.571429_g20077_i0 PRJNA724011 21089 633 2.571429 16.27714557 Ktedonobacterales bacterium 2306968 Bacteria Bacteria 56.5 0.005   NTclustered gi|2513924934|gb|CP126532.1| 2306968 g20077 i0 96.97 0.0521327014218009 33 1 5 0 194 226 1763406 1763374 MAG: Ktedonobacterales bacterium isolate bin_006 chromosome, complete genome blastn 33 56.5 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales     Ktedonobacterales bacterium
10914881 10914881 PRJNA724011_P_NODE_72389_length_294_cov_2.117647_g71366_i0 PRJNA724011 72389 294 2.117647 6.22588218 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 52.8 0.027   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g71366 i0 100 0.0952380952380952 28 0 10 0 9 36 283342 283369 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 28 52.8 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
13464530 13464530 PRJNA724011_P_NODE_63351_length_319_cov_1.304878_g62328_i0 PRJNA724011 63351 319 1.304878 4.16256082 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 54.7 0.008   NTclustered gi|2874253698|emb|OY969424.1| 1672391 g62328 i0 96.875 0.100313479623824 32 1 10 0 164 195 1394371 1394340 MAG: uncultured Chloroflexia bacterium isolate MFD06229.bin.c.1 genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
18562498 18562498 PRJNA724011_P_NODE_57755_length_336_cov_3.939163_g56732_i0 PRJNA724011 57755 336 3.939163 13.23558768 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 248 3.7699999999999995e-61   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g56732 i0 80.793 171.723214285714 328 53 97 10 3 327 4992349 4992669 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 57699 248 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
18562539 18562539 PRJNA724011_P_NODE_64175_length_316_cov_10.761317_g63152_i0 PRJNA724011 64175 316 10.761317 34.00576172 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 324 5.68e-84   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g63152 i0 89.272 27.4145569620253 261 24 82 4 58 316 276015 275757 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 8663 324 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;