RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724011 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12190146 12190146 PRJNA724011_P_NODE_72130_length_295_cov_1.387387_g71107_i0 PRJNA724011 72130 295 1.387387 4.09279165 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 448 2.9899999999999997e-121   NTclustered gi|971146634|emb|LN879502.1| 389348 g71107 i0 94.218 133.396610169492 294 16 99 1 1 293 1249812 1249519 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 39352 448 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
17771723 17771723 PRJNA724011_P_NODE_72514_length_294_cov_1.402715_g71491_i0 PRJNA724011 72514 294 1.402715 4.1239821 Pseudomonadati 3379134 Bacteria Bacteria 414 3.02e-111   NTclustered gi|2082223669|gb|CP075585.1| 225148 g71491 i0 94.139 147.214285714286 273 14 93 2 14 285 1020019 1019748 Candidatus Rhabdochlamydia porcellionis strain 15C chromosome, complete genome blastn 43281 414 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;