RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA724011 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2469201 2469201 PRJNA724011_P_NODE_44462_length_393_cov_113.215625_g43439_i0 PRJNA724011 44462 393 113.215625 444.93740625 Bdellovibrio 958 Bacteria Bacteria 54.7 0.01   NTclustered gi|2801803968|gb|CP169237.1| 959 g43439 i0 100 0.147582697201018 29 0 7 0 354 382 3600005 3600033 Bdellovibrio bacteriovorus strain Bd3 chromosome, complete genome blastn 58 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
16013379 16013379 PRJNA724011_P_NODE_76933_length_284_cov_1.459716_g75910_i0 PRJNA724011 76933 284 1.459716 4.14559344 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 385 2.28e-102   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g75910 i0 91.727 160.218309859155 278 21 98 2 1 277 3447834 3447558 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 45502 385 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
17288432 17288432 PRJNA724011_P_NODE_109594_length_241_cov_0.916667_g108571_i0 PRJNA724011 109594 241 0.916667 2.20916747 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 215 2.61e-51   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g108571 i0 82.857 323.98755186722 245 36 100 6 1 241 3250256 3250014 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 78081 215 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
23663402 23663402 PRJNA724011_P_NODE_106959_length_243_cov_0.905882_g105936_i0 PRJNA724011 106959 243 0.905882 2.20129326 Silvanigrella aquatica 1915309 Bacteria Bacteria 54.7 0.006   NTclustered gi|1114626566|gb|CP017834.1| 1915309 g105936 i0 100 0.119341563786008 29 0 12 0 53 81 766503 766531 Silvanigrella aquatica strain MWH-Nonnen-W8red chromosome blastn 29 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella aquatica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;