RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA724011 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5814001 5814001 PRJNA724011_P_NODE_111685_length_230_cov_2.929936_g110662_i0 PRJNA724011 111685 230 2.929936 6.7388528 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 388 1.3799999999999998e-103   NTclustered gi|2076452338|gb|CP075364.1| 2682144 g110662 i0 97.368 166.765217391304 228 6 99 0 1 228 669719 669946 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM1 chromosome blastn 38356 388 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
22388216 22388216 PRJNA724011_P_NODE_68858_length_303_cov_3.469565_g67835_i0 PRJNA724011 68858 303 3.469565 10.51278195 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 427 4.01e-115   NTclustered gi|2076452338|gb|CP075364.1| 2682144 g67835 i0 92.079 154.102310231023 303 24 100 0 1 303 669080 668778 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM1 chromosome blastn 46693 427 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
22388270 22388270 PRJNA724011_P_NODE_77978_length_282_cov_1.090909_g76955_i0 PRJNA724011 77978 282 1.090909 3.07636338 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 52.8 0.026   NTclustered gi|663071213|gb|CP007139.1| 661478 g76955 i0 100 0.099290780141844 28 0 10 0 176 203 649078 649105 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 28 52.8 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
22388370 22388370 PRJNA724011_P_NODE_91038_length_255_cov_3.230769_g90015_i0 PRJNA724011 91038 255 3.230769 8.23846095 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 291 4.509999999999999e-74   NTclustered gi|2076452338|gb|CP075364.1| 2682144 g90015 i0 87.854 112.078431372549 247 30 97 0 9 255 668523 668769 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM1 chromosome blastn 28580 291 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
23663391 23663391 PRJNA724011_P_NODE_105539_length_243_cov_2.688235_g104516_i0 PRJNA724011 105539 243 2.688235 6.53241105 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 361 3.2e-95   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g104516 i0 93.416 691.201646090535 243 16 100 0 1 243 895147 894905 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 167962 361 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;