RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA724011" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA724011 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10914818 10914818 PRJNA724011_P_NODE_63069_length_320_cov_1.242915_g62046_i0 PRJNA724011 63069 320 1.242915 3.977328 uncultured Poribacteria bacterium 265321 Bacteria Bacteria 54.7 0.008   NTclustered gi|2546137836|emb|OY282383.1| 265321 g62046 i0 100 0.178125 29 0 9 0 9 37 4101629 4101657 MAG: uncultured Poribacteria bacterium isolate 7c199f84-8048-4b63-b208-6e17c6421a0a genome assembly, chromosome: 1 blastn 57 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         uncultured Poribacteria bacterium
19837483 19837483 PRJNA724011_P_NODE_31216_length_493_cov_2.023810_g30197_i0 PRJNA724011 31216 493 2.02381 9.9773833 Candidatus Absconditicoccus praedator 2735562 Bacteria Bacteria 58.4 0.001   NTclustered gi|2160621446|gb|CP054059.1| 2735562 g30197 i0 81.818 0.269776876267748 77 6 14 6 96 165 530497 530572 Candidatus Absconditicoccus praedator strain M39-6 chromosome, complete genome blastn 133 58.4 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales Candidatus Absconditicoccaceae Candidatus Absconditicoccus Candidatus Absconditicoccus praedator
21112984 21112984 PRJNA724011_P_NODE_108557_length_242_cov_0.911243_g107534_i0 PRJNA724011 108557 242 0.911243 2.20520806 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 52.8 0.022   NTclustered gi|2621706011|emb|OY764073.1| 2026781 g107534 i0 100 0.115702479338843 28 0 12 0 193 220 846395 846422 MAG: Candidatus Poribacteria bacterium isolate c0dbee2e-4153-42cb-9392-5991059e4d04 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;