RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA722925" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 9 ✖

bioproject 1

  • PRJNA722925 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1193691 1193691 PRJNA722925_S_NODE_601_length_532_cov_3.977778_g542_i0 PRJNA722925 601 532 3.977778 21.16177896 Tobamovirus 12234 Viruses Viruses 972 0   NTclustered gi|2463200702|gb|ON987477.1| 12253 g542 i0 99.624 99.7763157894737 532 2 100 0 1 532 3270 3801 Tomato mosaic virus isolate NPPO-NL 41833930 RdRp, small replicase subunit, MP, and CP genes, complete cds blastn 53081 972 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
3261594 3261594 PRJNA722925_S_NODE_8503_length_166_cov_1.193798_g8440_i0 PRJNA722925 8503 166 1.193798 1.98170468 Caudoviricetes sp. 2832643 Viruses Viruses 246 5.94e-61   NTclustered gi|2914852811|gb|OR221766.1| 2832643 g8440 i0 93.865 2.18072289156627 163 10 100 0 1 163 10146 10308 MAG: Caudoviricetes sp. isolate MSP1259 genomic sequence blastn 362 246 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
10914274 10914274 PRJNA722925_S_NODE_10909_length_153_cov_1.008621_g10846_i0 PRJNA722925 10909 153 1.008621 1.54319013 Tobamovirus tomatotessellati 3432892 Viruses Viruses 283 4.0799999999999995e-72   NTclustered gi|924441762|emb|LN827938.1| 12253 g10846 i0 100 100 153 0 100 0 1 153 179 27 Tomato mosaic virus viral cRNA for coat and movement proteins (MP and CP genes), isolate AH9 blastn 15300 283 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
17288297 17288297 PRJNA722925_S_NODE_11514_length_150_cov_1.336283_g11451_i0 PRJNA722925 11514 150 1.336283 2.0044245 Caudoviricetes sp. 2832643 Viruses Viruses 272 8.609999999999998e-69   NTclustered gi|2054782182|tpg|BK049745.1| 2832643 g11451 i0 99.333 98.6933333333333 150 1 100 0 1 150 14216 14067 MAG TPA_asm: Caudoviricetes sp. isolate ctRES18, partial genome blastn 14804 272 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
19045483 19045483 PRJNA722925_S_NODE_4995_length_203_cov_1.879518_g4932_i0 PRJNA722925 4995 203 1.879518 3.81542154 Tobamovirus 12234 Viruses Viruses 370 4.3e-98   NTclustered gi|1338641205|gb|KY967228.1| 12253 g4932 i0 99.507 100 203 1 100 0 1 203 4849 4647 Tomato mosaic virus isolate HHHT, complete genome blastn 20300 370 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
19837238 19837238 PRJNA722925_S_NODE_9676_length_159_cov_0.959016_g9613_i0 PRJNA722925 9676 159 0.959016 1.52483544 Gammapapillomavirus 9 1175851 Viruses Viruses 294 1.98e-75   NTclustered gi|1273499269|gb|MF588712.1| 1175851 g9613 i0 100 2 159 0 100 0 1 159 1741 1899 Gammapapillomavirus 9 isolate Gamma09_w27c39c, complete genome blastn 318 294 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 9
21595871 21595871 PRJNA722925_S_NODE_5097_length_201_cov_1.664634_g5034_i0 PRJNA722925 5097 201 1.664634 3.34591434 Tobamovirus 12234 Viruses Viruses 366 5.5e-97   NTclustered gi|4377853|gb|AF062519.1|AF062519 12242 g5034 i0 99.502 100 201 1 100 0 1 201 165 365 Tobacco mosaic virus movement protein and coat protein genes, complete cds blastn 20100 366 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
22871203 22871203 PRJNA722925_S_NODE_3518_length_236_cov_2.095477_g3455_i0 PRJNA722925 3518 236 2.095477 4.94532572 root 1 Root_unresolved Root_unresolved 436 4.999999999999999e-118   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g3455 i0 100 99.9618644067797 236 0 100 0 1 236 3882 3647 Moloney murine leukemia virus, complete genome blastn 23591 436 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
24145219 24145219 PRJNA722925_S_NODE_4219_length_218_cov_1.292818_g4156_i0 PRJNA722925 4219 218 1.292818 2.81834324 root 1 Root_unresolved Root_unresolved 383 6.02e-102   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g4156 i0 100 94.9449541284404 207 0 95 0 12 218 2596 2802 Moloney murine leukemia virus, complete genome blastn 20698 383 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;