RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA722925" and tax_phylum = "Prasinodermophyta"

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tax_superkingdom 1

tax_phylum 1

  • Prasinodermophyta · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA722925 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5813865 5813865 PRJNA722925_S_NODE_8385_length_167_cov_0.900000_g8322_i0 PRJNA722925 8385 167 0.9 1.503 Prasinoderma singulare 676789 Plants Plants 126 8.14e-25   NTclustered gi|1812623613|gb|MT111932.1| 676789 g8322 i0 86.179 49.3353293413174 123 10 72 7 44 163 139 21 Prasinoderma singulare strain RCC927 small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 8239 126 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma singulare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;