RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA722925" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA722925 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7089069 7089069 PRJNA722925_S_NODE_6286_length_184_cov_2.489796_g6223_i0 PRJNA722925 6286 184 2.489796 4.58122464 Chondromyces crocatus 52 Bacteria Bacteria 224 3.139999999999999e-54   NTclustered gi|908353314|gb|CP012159.1| 52 g6223 i0 88.649 38.7608695652174 185 20 100 1 1 184 1431081 1431265 Chondromyces crocatus strain Cm c5, complete genome blastn 7132 224 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
13947539 13947539 PRJNA722925_S_NODE_6491_length_182_cov_3.234483_g6428_i0 PRJNA722925 6491 182 3.234483 5.88675906 Pendulispora 3375062 Bacteria Bacteria 311 2.31e-80   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g6428 i0 97.778 168.126373626374 180 4 99 0 3 182 7287651 7287472 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 30599 311 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;