RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA722925" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA722925 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1986278 1986278 PRJNA722925_S_NODE_2642_length_269_cov_1.293103_g2579_i0 PRJNA722925 2642 269 1.293103 3.47844707 Naegleria jadini 51636 Heterolobosea other_Eukaryota 294 3.71e-75   NTclustered gi|2438257170|gb|OP997288.1| 51636 g2579 i0 94.271 21.0520446096654 192 11 71 0 78 269 4399 4590 Naegleria jadini strain ITMAP400 plasmid CERE, complete sequence blastn 5663 294 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jadini
10914279 10914279 PRJNA722925_S_NODE_1669_length_331_cov_2.823129_g1606_i0 PRJNA722925 1669 331 2.8231290000000002 9.34455699 Naegleria pringsheimi 234921 Heterolobosea other_Eukaryota 475 1.5599999999999994e-129   NTclustered gi|2515557648|gb|OR045415.1| 234921 g1606 i0 93.519 39.9607250755287 324 13 98 7 1 323 5934 5618 Naegleria pringsheimi strain Singh(s) rDNA-containing extrachromosomal element genomic sequence; 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 13227 475 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria pringsheimi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;