RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA721440" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA721440 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7088943 7088943 PRJNA721440_S_NODE_5306_length_260_cov_1.289100_g5180_i0 PRJNA721440 5306 260 1.2891 3.35166 Adineta vaga 104782 Rotifera other_Eukaryota 455 1.55e-123   NTclustered gi|259129963|gb|GQ398061.1| 104782 g5180 i0 100 64.8115384615385 246 0 95 0 15 260 4159 4404 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16851 455 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
7571453 7571453 PRJNA721440_S_NODE_3246_length_316_cov_0.985019_g3120_i0 PRJNA721440 3246 316 0.985019 3.11266004 Adineta 104781 Rotifera other_Eukaryota 579 1.0999999999999999e-160   NTclustered gi|2537903787|gb|KM043252.2| 104782 g3120 i0 99.684 99.8449367088608 316 1 100 0 1 316 858 543 Adineta vaga voucher AD005 18S ribosomal RNA gene, partial sequence blastn 31551 579 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
10122182 10122182 PRJNA721440_S_NODE_10568_length_201_cov_1.125000_g10442_i0 PRJNA721440 10568 201 1.125 2.26125 Metazoa 33208 Rotifera other_Eukaryota 372 1.18e-98   NTclustered gi|37785582|gb|AY210469.1| 96448 g10442 i0 100 66.7213930348259 201 0 100 0 1 201 1810 1610 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 13411 372 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
10914198 10914198 PRJNA721440_S_NODE_8309_length_219_cov_1.258824_g8183_i0 PRJNA721440 8309 219 1.258824 2.75682456 Habrotrocha constricta 104786 Rotifera other_Eukaryota 217 6.489999999999999e-52   NTclustered gi|402761757|gb|JX184010.1| 104786 g8183 i0 84.685 4.91780821917808 222 28 100 5 1 219 219 1 Habrotrocha constricta cytochrome c oxidase subunit 2 (COX2) gene, complete cds; mitochondrial blastn 1077 217 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
16012670 16012670 PRJNA721440_S_NODE_1853_length_401_cov_6.090909_g1727_i0 PRJNA721440 1853 401 6.090909 24.42454509 Rotaria rotatoria 231624 Rotifera other_Eukaryota 399 1.1899999999999998e-106   NTclustered gi|270267490|ref|NC_013568.1| 231624 g1727 i0 85.496 24.0947630922693 393 46 97 10 11 397 2050 1663 Rotaria rotatoria mitochondrion, complete genome blastn 9662 399 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
16496571 16496571 PRJNA721440_S_NODE_8213_length_220_cov_1.040936_g8087_i0 PRJNA721440 8213 220 1.040936 2.2900592 Eurotatoria 2816136 Rotifera other_Eukaryota 407 3.61e-109   NTclustered gi|1399047|gb|U41281.1|PAU41281 44582 g8087 i0 100 100.136363636364 220 0 100 0 1 220 193 412 Philodina acuticornis 18S rRNA gene blastn 22030 407 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina acuticornis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;