RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA721440" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA721440 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3261429 3261429 PRJNA721440_S_NODE_1143_length_489_cov_3.506818_g1019_i0 PRJNA721440 1143 489 3.506818 17.14834002 Chloropicon primus 1764295 Plants Plants 267 1.56e-66   NTclustered gi|1678645830|ref|NC_042490.1| 1764295 g1019 i0 81.194 53.4089979550102 335 59 68 3 157 489 36667 36999 Chloropicon primus culture CCMP:1205 mitochondrion, complete genome blastn 26117 267 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon primus
13947472 13947472 PRJNA721440_S_NODE_19011_length_164_cov_0.947826_g18885_i0 PRJNA721440 19011 164 0.947826 1.55443464 Ostreococcus 70447 Plants Plants 235 1.27e-57   NTclustered gi|507138030|gb|KC583074.1| 171245 g18885 i0 100 77.4756097560976 127 0 77 0 1 127 1118 1244 Uncultured Chlorophyta clone RS.12f.10m.0030 18S ribosomal RNA gene, partial sequence blastn 12706 235 1 Eukaryota   Viridiplantae Chlorophyta         uncultured Chlorophyta
16496561 16496561 PRJNA721440_S_NODE_1493_length_437_cov_313.152062_g1367_i0 PRJNA721440 1493 437 313.152062 1368.47451094 Eukaryota 2759 Plants Plants 673 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g1367 i0 100 83.1144164759725 364 0 83 0 1 364 506 869 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 36321 673 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;