RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA721440" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA721440 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12189480 12189480 PRJNA721440_S_NODE_8370_length_218_cov_2.863905_g8244_i0 PRJNA721440 8370 218 2.863905 6.2433129 Proschkinia sp. SZCZR1824 2588390 SAR_Eukaryotes SAR_Eukaryotes 80.5 8.84e-11   NTclustered gi|1681061561|gb|MH800316.1| 2588390 g8244 i0 76.433 3.18807339449541 157 31 71 6 57 211 4566 4414 Proschkinia sp. SZCZR1824 mitochondrion, complete genome blastn 695 80.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Proschkiniaceae Proschkinia Proschkinia sp. SZCZR1824
15222186 15222186 PRJNA721440_S_NODE_15452_length_174_cov_3.584000_g15326_i0 PRJNA721440 15452 174 3.584 6.23616 Bacillariaceae 33852 SAR_Eukaryotes SAR_Eukaryotes 316 4.7e-82   NTclustered gi|2839792213|gb|PQ512811.1| 37318 g15326 i0 99.425 97.0344827586207 174 1 100 0 1 174 4156 4329 Pseudo-nitzschia pungens isolate CNS00141 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16884 316 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia pungens
20320055 20320055 PRJNA721440_S_NODE_3236_length_316_cov_2.205993_g3110_i0 PRJNA721440 3236 316 2.205993 6.97093788 Pseudo-nitzschia 41953 SAR_Eukaryotes SAR_Eukaryotes 579 1.0999999999999999e-160   NTclustered gi|2199076168|gb|MZ267111.2| 37318 g3110 i0 99.684 99.7626582278481 316 1 100 0 1 316 1 316 Pseudo-nitzschia pungens isolate CNS00141 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 31525 579 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia pungens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;