RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA719595" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA719595 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5813064 5813064 PRJNA719595_P_NODE_7745_length_248_cov_0.891429_g7710_i0 PRJNA719595 7745 248 0.891429 2.21074392 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 274 4.399999999999999e-69   NTclustered gi|575456455|gb|CP007128.1| 861299 g7710 i0 86.992 0.991935483870968 246 28 98 4 1 244 1513566 1513323 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 246 274 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
9637971 9637971 PRJNA719595_P_NODE_7748_length_248_cov_0.891429_g7713_i0 PRJNA719595 7748 248 0.891429 2.21074392 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 191 4.56e-44   NTclustered gi|2874253728|emb|OY969570.1| 412054 g7713 i0 82.727 0.887096774193548 220 32 88 5 32 248 5794446 5794662 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 220 191 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10913522 10913522 PRJNA719595_P_NODE_9329_length_242_cov_0.923077_g9294_i0 PRJNA719595 9329 242 0.923077 2.23384634 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 243 1.2100000000000004e-59   NTclustered gi|2874253728|emb|OY969570.1| 412054 g9294 i0 86.425 4.97107438016529 221 30 91 0 6 226 1306510 1306730 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 1203 243 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17287485 17287485 PRJNA719595_P_NODE_6714_length_252_cov_0.871508_g6679_i0 PRJNA719595 6714 252 0.871508 2.19620016 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 215 2.75e-51   NTclustered gi|2874253978|emb|OY970303.1| 412054 g6679 i0 82.558 1.02380952380952 258 31 98 7 1 247 3599513 3599767 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 258 215 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17287529 17287529 PRJNA719595_P_NODE_8934_length_244_cov_0.912281_g8899_i0 PRJNA719595 8934 244 0.912281 2.22596564 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 254 5.62e-63   NTclustered gi|575456455|gb|CP007128.1| 861299 g8899 i0 85.833 4.66393442622951 240 32 98 2 5 243 543071 542833 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 1138 254 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
21112076 21112076 PRJNA719595_P_NODE_8057_length_247_cov_0.896552_g8022_i0 PRJNA719595 8057 247 0.896552 2.21448344 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 303 5.58e-78   NTclustered gi|2874253978|emb|OY970303.1| 412054 g8022 i0 89.256 10.9676113360324 242 26 100 0 6 247 3077426 3077667 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 2709 303 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;