RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA719595" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA719595 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9637930 9637930 PRJNA719595_P_NODE_5868_length_264_cov_1.225131_g5833_i0 PRJNA719595 5868 264 1.225131 3.23434584 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 488 1.5499999999999999e-133   NTclustered gi|53829555|gb|AY582830.1| 289359 g5833 i0 100 17.5568181818182 264 0 100 0 1 264 342 605 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 4635 488 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
10913507 10913507 PRJNA719595_P_NODE_8669_length_245_cov_0.906977_g8634_i0 PRJNA719595 8669 245 0.906977 2.22209365 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 255 1.57e-63   NTclustered gi|53829555|gb|AY582830.1| 289359 g8634 i0 98.611 21.6489795918367 144 2 59 0 102 245 1238 1095 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 5304 255 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
17287475 17287475 PRJNA719595_P_NODE_6254_length_256_cov_1.092896_g6219_i0 PRJNA719595 6254 256 1.092896 2.79781376 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 230 1e-55   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g6219 i0 83.142 35.3046875 261 34 100 10 1 256 3730 3985 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 9038 230 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;