RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA719595" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA719595 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7088091 7088091 PRJNA719595_P_NODE_3346_length_340_cov_3.082397_g3311_i0 PRJNA719595 3346 340 3.082397 10.4801498 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 490 5.74e-134   NTclustered gi|2076441902|gb|CP075368.1| 2026777 g3311 i0 93.598 165.064705882353 328 21 96 0 2 329 2582841 2582514 MAG: Phycisphaeraceae bacterium isolate ACE_PLA2 chromosome blastn 56122 490 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
7088256 7088256 PRJNA719595_P_NODE_9086_length_243_cov_0.917647_g9051_i0 PRJNA719595 9086 243 0.917647 2.22988221 uncultured Phycisphaerales bacterium 904075 Bacteria Bacteria 108 4.61e-19   NTclustered gi|2874253847|emb|OY969903.1| 904075 g9051 i0 91.139 0.325102880658436 79 7 33 0 43 121 4663750 4663672 MAG: uncultured Phycisphaerales bacterium isolate MFD01213.bin.c.1 genome assembly, chromosome: 1 blastn 79 108 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     uncultured Phycisphaerales bacterium
9637959 9637959 PRJNA719595_P_NODE_7048_length_251_cov_0.876404_g7013_i0 PRJNA719595 7048 251 0.876404 2.19977404 Humisphaera borealis 2807512 Bacteria Bacteria 172 1.67e-38   NTclustered gi|1927742986|gb|CP063458.1| 2807512 g7013 i0 79.92 1.53386454183267 249 39 96 9 7 248 3783164 3783408 Humisphaera borealis strain M1803 chromosome, complete genome blastn 385 172 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis
10121945 10121945 PRJNA719595_P_NODE_9308_length_242_cov_0.923077_g9273_i0 PRJNA719595 9308 242 0.923077 2.23384634 Bacteria 2 Bacteria Bacteria 69.4 2.16e-7   NTclustered gi|1387286769|gb|CP023004.1| 1796921 g9273 i0 100 395.54132231405 37 0 17 0 145 181 112989 112953 Ereboglobus luteus strain Ho45, complete genome blastn 95721 69.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Ereboglobus Ereboglobus luteus
13463245 13463245 PRJNA719595_P_NODE_9211_length_243_cov_0.917647_g9176_i0 PRJNA719595 9211 243 0.917647 2.22988221 Aquisphaera giovannonii 406548 Bacteria Bacteria 261 3.34e-65   NTclustered gi|1730068067|gb|CP042997.1| 406548 g9176 i0 86.066 82.5390946502058 244 32 100 2 1 243 3440678 3440436 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 20057 261 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii
16011995 16011995 PRJNA719595_P_NODE_6773_length_252_cov_0.871508_g6738_i0 PRJNA719595 6773 252 0.871508 2.19620016 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 228 3.5399999999999984e-55   NTclustered gi|2874253768|emb|OY969715.1| 412056 g6738 i0 83.004 1.00396825396825 253 41 100 2 1 252 3986251 3986000 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 253 228 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;