RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA719595" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA719595 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1985512 1985512 PRJNA719595_P_NODE_7262_length_250_cov_0.881356_g7227_i0 PRJNA719595 7262 250 0.881356 2.20339 Herpetomonas muscarum 5718 Euglenozoa other_Eukaryota 270 5.74e-68   NTclustered gi|529495907|gb|KC503386.1| 5718 g7227 i0 87.029 6.348 239 31 96 0 2 240 260 22 Herpetomonas muscarum clone H1_2.5.1.6 methionine adenosyltransferase gene, complete cds blastn 1587 270 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Herpetomonas Herpetomonas muscarum
14738434 14738434 PRJNA719595_P_NODE_4432_length_300_cov_1.374449_g4397_i0 PRJNA719595 4432 300 1.374449 4.123347 Neobodo designis 312471 Euglenozoa other_Eukaryota 538 1.76e-148   NTclustered gi|225216795|gb|FJ176710.1| 312471 g4397 i0 99 102.416666666667 300 3 100 0 1 300 917 618 Neobodo designis HFCC95 28S ribosomal RNA gene, partial sequence blastn 30725 538 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
22386901 22386901 PRJNA719595_P_NODE_7218_length_250_cov_0.881356_g7183_i0 PRJNA719595 7218 250 0.881356 2.20339 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 185 2.14e-42   NTclustered gi|2787710155|ref|XM_067331174.1| 715481 g7183 i0 80.08 32.808 251 48 100 2 1 250 406 157 Trypanosoma melophagium Ribosomal protein L19/L19e (LSM04_007600), partial mRNA blastn 8202 185 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
23662390 23662390 PRJNA719595_P_NODE_2919_length_359_cov_1.090909_g2884_i0 PRJNA719595 2919 359 1.090909 3.91636331 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 252 3.1199999999999997e-62   NTclustered gi|1002457625|ref|XM_015799400.1| 157538 g2884 i0 81.329 72.1559888579387 316 53 87 6 41 354 445 134 Leptomonas pyrrhocoris putative 40S ribosomal protein S13 mRNA blastn 25904 252 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;