RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA719595" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA719595 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4537797 4537797 PRJNA719595_P_NODE_4864_length_289_cov_1.370370_g4829_i0 PRJNA719595 4864 289 1.37037 3.9603693 Acytostelium subglobosum 361139 Evosea other_Eukaryota 65.8 3.44e-6   NTclustered gi|831764699|ref|XM_012895807.1| 1410327 g4829 i0 91.667 0.166089965397924 48 3 16 1 157 203 1625 1578 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 48 65.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
7088128 7088128 PRJNA719595_P_NODE_4466_length_299_cov_2.278761_g4431_i0 PRJNA719595 4466 299 2.278761 6.81349539 Cavenderia fasciculata 261658 Evosea other_Eukaryota 122 2.0899999999999994e-23   NTclustered gi|470265703|ref|XM_004361527.1| 261658 g4431 i0 87.85 3.01003344481605 107 10 35 1 17 120 455 349 Cavenderia fasciculata annexin VII (nxnA), partial mRNA blastn 900 122 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
17287506 17287506 PRJNA719595_P_NODE_7914_length_248_cov_0.891429_g7879_i0 PRJNA719595 7914 248 0.891429 2.21074392 Acytostelium subglobosum 361139 Evosea other_Eukaryota 239 1.6e-58   NTclustered gi|831766831|ref|XM_012896462.1| 1410327 g7879 i0 84.146 17.6774193548387 246 39 99 0 3 248 257 12 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 4384 239 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;