RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA716463" and tax_phylum = "Thermomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA716463 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
708231 708231 PRJNA716463_P_NODE_61681_length_282_cov_3.129187_g61264_i0 PRJNA716463 61681 282 3.129187 8.82430734 Thermomicrobium roseum 500 Bacteria Bacteria 115 3.27e-21   NTclustered gi|221155340|gb|CP001275.1| 309801 g61264 i0 94.595 0.26241134751773 74 4 26 0 209 282 1811771 1811844 Thermomicrobium roseum DSM 5159, complete genome blastn 74 115 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum
9636359 9636359 PRJNA716463_P_NODE_37628_length_299_cov_2.933628_g37211_i0 PRJNA716463 37628 299 2.933628 8.77154772 Thermomicrobium roseum 500 Bacteria Bacteria 139 2.07e-28   NTclustered gi|221155340|gb|CP001275.1| 309801 g37211 i0 95.402 4.55852842809365 87 4 29 0 152 238 133728 133642 Thermomicrobium roseum DSM 5159, complete genome blastn 1363 139 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum
21111246 21111246 PRJNA716463_P_NODE_86797_length_263_cov_1.931579_g86380_i0 PRJNA716463 86797 263 1.931579 5.08005277 Thermomicrobium roseum 500 Bacteria Bacteria 228 3.719999999999999e-55   NTclustered gi|221157271|gb|CP001276.1| 309801 g86380 i0 82.692 0.988593155893536 260 41 98 4 4 261 892565 892308 Thermomicrobium roseum DSM 5159 plasmid, complete sequence blastn 260 228 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;