RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA716463" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA716463 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7085779 7085779 PRJNA716463_P_NODE_100206_length_251_cov_1.730337_g99789_i0 PRJNA716463 100206 251 1.730337 4.34314587 Entamoeba gingivalis 38877 Evosea other_Eukaryota 464 2.47e-126   NTclustered gi|1200176483|gb|KX027297.1| 38877 g99789 i0 100 55.4183266932271 251 0 100 0 1 251 1530 1280 Entamoeba gingivalis strain gP11 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 13910 464 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
11396171 11396171 PRJNA716463_P_NODE_100249_length_251_cov_1.730337_g99832_i0 PRJNA716463 100249 251 1.730337 4.34314587 Entamoeba 5758 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|67466604|ref|XM_644358.1| 294381 g99832 i0 100 0.223107569721116 28 0 11 0 168 195 1890 1917 Entamoeba histolytica HM-1:IMSS long-chain-fatty-acid--CoA ligase, putative (EHI_188590), partial mRNA blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
19834920 19834920 PRJNA716463_P_NODE_46176_length_293_cov_3.554545_g45759_i0 PRJNA716463 46176 293 3.554545 10.41481685 Fuligo sp. BX-2002 211112 Evosea other_Eukaryota 512 1.04e-140   NTclustered gi|24711464|gb|AY145526.1| 211112 g45759 i0 97.987 13.4129692832764 298 1 100 1 1 293 997 700 Fuligo sp. BX-2002 18S ribosomal RNA gene, partial sequence blastn 3930 512 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo sp. BX-2002

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;