RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA716463" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA716463 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4535711 4535711 PRJNA716463_P_NODE_119084_length_230_cov_2.566879_g118666_i0 PRJNA716463 119084 230 2.566879 5.9038217 Chlamydomonas reinhardtii 3055 Plants Plants 390 3.83e-104   NTclustered gi|2082250823|ref|XM_043064283.1| 3055 g118666 i0 99.533 1.05217391304348 214 1 93 0 17 230 1243 1456 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g337100v5), mRNA blastn 242 390 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8360427 8360427 PRJNA716463_P_NODE_103027_length_249_cov_0.875000_g102610_i0 PRJNA716463 103027 249 0.875 2.17875 Chlamydomonas reinhardtii 3055 Plants Plants 460 3.16e-125   NTclustered gi|2082270084|ref|XM_001697051.2| 3055 g102610 i0 100 1 249 0 100 0 1 249 2895 2647 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_17g720050v5), mRNA blastn 249 460 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14736342 14736342 PRJNA716463_P_NODE_11832_length_346_cov_5.970696_g11417_i0 PRJNA716463 11832 346 5.970696 20.65860816 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.009   NTclustered gi|2082271482|ref|XM_043072831.1| 3055 g11417 i0 100 0.0838150289017341 29 0 8 0 198 226 486 458 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_19g750147v5), mRNA blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;