RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA716463" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA716463 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1193093 1193093 PRJNA716463_P_NODE_78101_length_270_cov_2.015228_g77684_i0 PRJNA716463 78101 270 2.015228 5.4411156 Naegleria 5761 Heterolobosea other_Eukaryota 117 8.65e-22   NTclustered gi|2618963742|gb|OR769034.1| 5762 g77684 i0 90 28.9222222222222 90 9 33 0 1 90 5139 5050 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 7809 117 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
7086045 7086045 PRJNA716463_P_NODE_117306_length_233_cov_2.575000_g116888_i0 PRJNA716463 117306 233 2.575 5.99975 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 420 4.96e-113   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g116888 i0 99.142 20.8412017167382 233 2 100 0 1 233 3381 3149 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4856 420 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
7570856 7570856 PRJNA716463_P_NODE_64366_length_280_cov_3.246377_g63949_i0 PRJNA716463 64366 280 3.246377 9.0898556 Naegleria 5761 Heterolobosea other_Eukaryota 518 2.12e-142   NTclustered gi|2618963742|gb|OR769034.1| 5762 g63949 i0 100 71.6357142857143 280 0 100 0 1 280 3046 3325 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 20058 518 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12187768 12187768 PRJNA716463_P_NODE_76030_length_271_cov_4.156566_g75613_i0 PRJNA716463 76030 271 4.156566 11.26429386 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 396 9.969999999999997e-106   NTclustered gi|68271543|gb|DQ086724.1| 127150 g75613 i0 92.806 164 278 13 100 5 1 271 314 591 Rhynchomonas nasuta isolate RHYNCHO large subunit ribosomal RNA gene, partial sequence blastn 44444 396 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;