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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA715462" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA715462 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1981720 1981720 PRJNA715462_P_NODE_30162_length_325_cov_1.154762_g29366_i0 PRJNA715462 30162 325 1.154762 3.7529765 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 259 1.68e-64   NTclustered gi|673019533|ref|XM_008865506.1| 157072 g29366 i0 83.333 74.8369230769231 282 45 86 2 45 325 117 397 Aphanomyces invadans hypothetical protein mRNA blastn 24322 259 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
3256792 3256792 PRJNA715462_P_NODE_18963_length_429_cov_1.620787_g18167_i0 PRJNA715462 18963 429 1.620787 6.95317623 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 257 8.170000000000001e-64   NTclustered gi|695406446|ref|XM_009525816.1| 67593 g18167 i0 81.505 62.9300699300699 319 53 74 6 4 319 397 82 Phytophthora sojae hypothetical protein mRNA blastn 26997 257 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
5020618 5020618 PRJNA715462_P_NODE_7064_length_865_cov_1.535354_g6371_i0 PRJNA715462 7064 865 1.535354 13.2808121 Globisporangium 1448052 SAR_Eukaryotes SAR_Eukaryotes 704 0   NTclustered gi|1780534031|gb|MK753001.1| 2052683 g6371 i0 81.959 90.9606936416185 837 145 96 6 1 834 846 13 Globisporangium ultimum var. ultimum isolate KSSO_5-45 beta-tubulin mRNA, complete cds blastn 78681 708 0.994350282485876 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
7084383 7084383 PRJNA715462_P_NODE_29626_length_328_cov_1.207843_g28830_i0 PRJNA715462 29626 328 1.207843 3.96172504 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 420 7.34e-113   NTclustered gi|2794923360|ref|XM_067881981.1| 164328 g28830 i0 89.877 99.3567073170732 326 33 99 0 1 326 37 362 Phytophthora ramorum Calmodulin (KRP23_11430), partial mRNA blastn 32589 420 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
7570179 7570179 PRJNA715462_P_NODE_6166_length_954_cov_2.835414_g5520_i0 PRJNA715462 6166 954 2.835414 27.04984956 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 283 3.14e-71   NTclustered gi|695431986|ref|XM_009532530.1| 67593 g5520 i0 84.429 24.6624737945493 289 44 30 1 11 298 798 1086 Phytophthora sojae hypothetical protein partial mRNA blastn 23528 285 0.992982456140351 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
8358889 8358889 PRJNA715462_P_NODE_23927_length_370_cov_2.239057_g23131_i0 PRJNA715462 23927 370 2.239057 8.2845109 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 265 4.15e-66   NTclustered gi|2794910559|ref|XM_067891130.1| 164328 g23131 i0 79.73 6.19189189189189 370 71 99 4 2 369 728 361 Phytophthora ramorum 3-oxoacyl-[acyl-carrier-protein] reductase FabG (KRP23_5997), partial mRNA blastn 2291 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
8359439 8359439 PRJNA715462_P_NODE_49607_length_253_cov_1.461111_g48811_i0 PRJNA715462 49607 253 1.461111 3.69661083 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 148 2.8499999999999995e-31   NTclustered gi|698795769|ref|XM_009832612.1| 112090 g48811 i0 81.421 1.87351778656126 183 32 72 2 66 247 93 274 Aphanomyces astaci hypothetical protein mRNA blastn 474 148 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
9634309 9634309 PRJNA715462_P_NODE_32588_length_311_cov_1.260504_g31792_i0 PRJNA715462 32588 311 1.260504 3.92016744 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 228 4.5e-55   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g31792 i0 81.852 81.9967845659164 270 49 87 0 1 270 314 45 Pythium splendens calmodulin mRNA, complete cds blastn 25501 228 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
9634503 9634503 PRJNA715462_P_NODE_42508_length_273_cov_1.540000_g41712_i0 PRJNA715462 42508 273 1.54 4.2042 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 233 8.339999999999999e-57   NTclustered gi|695423734|ref|XM_009530461.1| 67593 g41712 i0 83.534 91.5787545787546 249 41 91 0 16 264 899 1147 Phytophthora sojae hypothetical protein mRNA blastn 25001 233 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
14734513 14734513 PRJNA715462_P_NODE_22712_length_382_cov_1.834951_g21916_i0 PRJNA715462 22712 382 1.834951 7.00951282 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 335 3.229999999999999e-87   NTclustered gi|675199240|ref|XM_008910257.1| 761204 g21916 i0 83.2 87.8612565445026 375 53 98 8 1 373 1017 651 Phytophthora parasitica INRA-310 ATP synthase subunit beta, mitochondrial mRNA blastn 33563 335 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
15220782 15220782 PRJNA715462_P_NODE_32392_length_312_cov_1.288703_g31596_i0 PRJNA715462 32392 312 1.288703 4.02075336 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 259 1.6e-64   NTclustered gi|166036286|emb|CU356935.1| 100861 g31596 i0 82.653 89.4326923076923 294 49 94 2 15 307 481 773 Aphanomyces euteiches cDNA blastn 27903 259 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22383486 22383486 PRJNA715462_P_NODE_42438_length_273_cov_2.230000_g41642_i0 PRJNA715462 42438 273 2.23 6.0879 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 300 8.11e-77   NTclustered gi|189084354|gb|BT031870.1| 4784 g41642 i0 88.934 86.6959706959707 244 25 89 2 32 273 75 318 Phytophthora capsici clone CBOT85-O08 mRNA sequence blastn 23668 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
24932137 24932137 PRJNA715462_P_NODE_24380_length_366_cov_2.317406_g23584_i0 PRJNA715462 24380 366 2.317406 8.48170596 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 259 1.91e-64   NTclustered gi|695426125|ref|XM_009531049.1| 67593 g23584 i0 80.46 42.1502732240437 348 60 94 8 3 346 747 404 Phytophthora sojae hypothetical protein partial mRNA blastn 15427 259 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;