RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA715462" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA715462 · 18 ✖

analysis 1

  • blastn · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3256690 3256690 PRJNA715462_P_NODE_15523_length_491_cov_26.504785_g14727_i0 PRJNA715462 15523 491 26.504785 130.13849435 Pristionchus pauli 376545 Nematoda Nematoda 292 2.5899999999999993e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g14727 i0 81.492 4.59470468431772 362 61 73 6 69 427 395 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
3256929 3256929 PRJNA715462_P_NODE_24763_length_363_cov_1.551724_g23967_i0 PRJNA715462 24763 363 1.551724 5.63275812 Caenorhabditis elegans 6239 Nematoda Nematoda 220 8.92e-53   NTclustered gi|3217630|emb|AL023815.1| 6239 g23967 i0 78.226 43.9504132231405 372 61 99 18 1 362 5784 6145 Caenorhabditis elegans Fosmid H28O16, complete sequence blastn 15954 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
4534775 4534775 PRJNA715462_P_NODE_64524_length_243_cov_1.764706_g63728_i0 PRJNA715462 64524 243 1.764706 4.28823558 Strongyloides papillosus 174720 Nematoda Nematoda 150 7.55e-32   NTclustered gi|374718480|gb|JF326458.1| 174720 g63728 i0 80.729 64.4814814814815 192 37 79 0 1 192 918 727 Strongyloides papillosus eukaryotic translation elongation factor a alpha mRNA, complete cds blastn 15669 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
4534931 4534931 PRJNA715462_P_NODE_8344_length_772_cov_1.836910_g7613_i0 PRJNA715462 8344 772 1.83691 14.1809452 Oscheius tipulae 141969 Nematoda Nematoda 320 1.9199999999999998e-82   NTclustered gi|62866514|gb|AY928339.1| 141969 g7613 i0 84.953 41.7888601036269 319 44 41 4 2 318 1080 1396 Oscheius tipulae clone pA1 eukaryotic translation elongation factor 1A (eft-2) mRNA, complete cds blastn 32261 320 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
9634026 9634026 PRJNA715462_P_NODE_20628_length_406_cov_2.882883_g19832_i0 PRJNA715462 20628 406 2.882883 11.70450498 Caenorhabditis remanei 31234 Nematoda Nematoda 198 4.73e-46   NTclustered gi|2445357699|ref|XM_003108803.2| 31234 g19832 i0 82.883 2.45812807881773 222 36 54 2 86 306 61 281 Caenorhabditis remanei uncharacterized protein (GCK72_005843), partial mRNA blastn 998 198 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
9634071 9634071 PRJNA715462_P_NODE_22408_length_386_cov_0.955272_g21612_i0 PRJNA715462 22408 386 0.955272 3.68734992 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.037   NTclustered gi|690018612|emb|LM525850.1| 174720 g21612 i0 100 0.0725388601036269 28 0 7 0 342 369 31163 31190 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000228 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
9634351 9634351 PRJNA715462_P_NODE_34648_length_300_cov_1.709251_g33852_i0 PRJNA715462 34648 300 1.709251 5.127753 Leptojacobus dorci 1463561 Nematoda Nematoda 254 7.13e-63   NTclustered gi|675119105|gb|KJ877432.1| 1463561 g33852 i0 83.955 30.91 268 39 89 4 35 300 443 178 Leptojacobus dorci strain RS9005 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 9273 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Leptojacobus Leptojacobus dorci
9634630 9634630 PRJNA715462_P_NODE_48188_length_257_cov_1.434783_g47392_i0 PRJNA715462 48188 257 1.434783 3.68739231 Strongyloides ratti 34506 Nematoda Nematoda 54.7 0.006   NTclustered gi|1376157371|ref|XM_024646132.1| 34506 g47392 i0 100 0.11284046692607 29 0 11 0 141 169 668 640 Strongyloides ratti Protein of unknown function DUF273 family-containing protein (SRAE_0000026500), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
10909529 10909529 PRJNA715462_P_NODE_20009_length_414_cov_2.302053_g19213_i0 PRJNA715462 20009 414 2.302053 9.53049942 Caenorhabditis remanei 31234 Nematoda Nematoda 340 7.589999999999999e-89   NTclustered gi|2445392243|ref|XM_003102588.2| 31234 g19213 i0 82.487 2.14492753623188 394 64 94 4 25 414 1 393 Caenorhabditis remanei uncharacterized protein (GCK72_023426), partial mRNA blastn 888 340 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
12185177 12185177 PRJNA715462_P_NODE_36590_length_291_cov_1.766055_g35794_i0 PRJNA715462 36590 291 1.766055 5.13922005 Diploscapter coronatus 288516 Nematoda Nematoda 418 2.3099999999999995e-112   NTclustered gi|1211677252|ref|NC_035106.1| 288516 g35794 i0 93.286 96.6116838487973 283 19 97 0 1 283 7644 7926 Diploscapter coronatus mitochondrial DNA, complete genome, strain: PDL0010 blastn 28114 418 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter coronatus
12185346 12185346 PRJNA715462_P_NODE_44430_length_268_cov_1.107692_g43634_i0 PRJNA715462 44430 268 1.107692 2.96861456 Caenorhabditis briggsae 6238 Nematoda Nematoda 202 2.3e-47   NTclustered gi|268531849|ref|XM_002631007.1| 6238 g43634 i0 80.769 3.66044776119403 260 48 97 2 8 266 282 540 Caenorhabditis briggsae Protein CBR-LEC-1 (Cbr-lec-1), partial mRNA blastn 981 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
12185487 12185487 PRJNA715462_P_NODE_51630_length_251_cov_0.865169_g50834_i0 PRJNA715462 51630 251 0.865169 2.17157419 Rhabditis sp. DW-2012 1264781 Nematoda Nematoda 248 2.7e-61   NTclustered gi|426270576|gb|JQ713952.1| 1264781 g50834 i0 85.897 94.6573705179283 234 32 93 1 2 234 939 706 Rhabditis sp. DW-2012 isolate KS594 unc-54 gene, partial cds blastn 23759 248 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis sp. DW-2012
12671837 12671837 PRJNA715462_P_NODE_35470_length_296_cov_1.618834_g34674_i0 PRJNA715462 35470 296 1.618834 4.79174864 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 303 6.87e-78   NTclustered gi|687022643|emb|LM525557.1| 174720 g34674 i0 85.324 93.6283783783784 293 43 99 0 1 293 537948 538240 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000003 blastn 27714 303 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
16008206 16008206 PRJNA715462_P_NODE_26373_length_350_cov_1.111913_g25577_i0 PRJNA715462 26373 350 1.111913 3.8916955 Diploscapter sp. 55800 Nematoda Nematoda 545 1.24e-150   NTclustered gi|1938289465|gb|MW300616.1| 55800 g25577 i0 95.087 99.2942857142857 346 17 99 0 1 346 166 511 Diploscapter sp. voucher AL-CMPST cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial blastn 34753 545 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp.
16009049 16009049 PRJNA715462_P_NODE_67953_length_241_cov_1.928571_g67157_i0 PRJNA715462 67953 241 1.928571 4.64785611 Loa loa 7209 Nematoda Nematoda 65.8 2.79e-6   NTclustered gi|1158596406|ref|XM_020450169.1| 7209 g67157 i0 90 0.605809128630705 50 5 61 0 110 159 1875 1826 Loa loa ZAG-1 protein mRNA blastn 146 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
19832211 19832211 PRJNA715462_P_NODE_13756_length_535_cov_21.880952_g12962_i0 PRJNA715462 13756 535 21.880952 117.0630932 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.7999999999999998e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g12962 i0 81.166 23.0841121495327 223 28 40 11 73 288 49 264 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 12350 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
23658997 23658997 PRJNA715462_P_NODE_40979_length_278_cov_1.346341_g40183_i0 PRJNA715462 40979 278 1.346341 3.74282798 Caenorhabditis elegans 6239 Nematoda Nematoda 102 2.51e-17   NTclustered gi|687866211|emb|LK928092.1| 6239 g40183 i0 90.789 0.546762589928058 76 7 27 0 155 230 46346 46421 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000463 blastn 152 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23659517 23659517 PRJNA715462_P_NODE_68199_length_241_cov_1.375000_g67403_i0 PRJNA715462 68199 241 1.375 3.31375 Caenorhabditis briggsae 6238 Nematoda Nematoda 261 3.31e-65   NTclustered gi|268577392|ref|XM_002643633.1| 6238 g67403 i0 86.25 4.94605809128631 240 33 99 0 2 241 345 106 Caenorhabditis briggsae Protein CBR-MLC-2.2 (Cbr-mlc-2.2), partial mRNA blastn 1192 261 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;