RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA715462" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA715462 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
705212 705212 PRJNA715462_P_NODE_12221_length_583_cov_1.868627_g11432_i0 PRJNA715462 12221 583 1.868627 10.89409541 Candidatus Phytoplasma cynodontis 72990 Bacteria Bacteria 56.5 0.004   NTclustered gi|2511947619|gb|CP126225.1| 72990 g11432 i0 100 0.0514579759862779 30 0 5 0 228 257 435024 434995 MAG: Candidatus Phytoplasma cynodontis isolate GY2015 chromosome, complete genome blastn 30 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma cynodontis
13460089 13460089 PRJNA715462_P_NODE_62391_length_245_cov_0.895349_g61595_i0 PRJNA715462 62391 245 0.895349 2.19360505 Mesomycoplasma moatsii 171287 Bacteria Bacteria 287 5.57e-73   NTclustered gi|2860287645|gb|CP174166.1| 171287 g61595 i0 87.755 24.3020408163265 245 30 100 0 1 245 450369 450613 Mesomycoplasma moatsii strain MK 405 chromosome, complete genome blastn 5954 287 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma moatsii
13946183 13946183 PRJNA715462_P_NODE_70191_length_231_cov_2.284810_g69395_i0 PRJNA715462 70191 231 2.28481 5.2779111 Mycoplasmopsis 2767358 Bacteria Bacteria 54.7 0.006   NTclustered gi|2673562796|gb|CP144311.1| 2110 g69395 i0 100 1.004329004329 29 0 13 0 105 133 305318 305290 Mycoplasmopsis agalactiae strain GA572 chromosome, complete genome blastn 232 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis agalactiae
24932198 24932198 PRJNA715462_P_NODE_26940_length_346_cov_1.164835_g26144_i0 PRJNA715462 26940 346 1.164835 4.0303291 Spiroplasma endosymbiont of Harpalus anxius 3077931 Bacteria Bacteria 54.7 0.009   NTclustered gi|2813305944|emb|OZ187007.1| 3077931 g26144 i0 100 0.0838150289017341 29 0 8 0 72 100 1750943 1750915 Spiroplasma endosymbiont of Harpalus anxius isolate 66129c39-b7a8-4b37-864c-2d57ae6f9329 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Harpalus anxius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;