RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA715462" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA715462 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3256910 3256910 PRJNA715462_P_NODE_23983_length_370_cov_1.269360_g23187_i0 PRJNA715462 23983 370 1.26936 4.696632 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 337 8.669999999999998e-88   NTclustered gi|116222176|gb|DQ980464.1| 407209 g23187 i0 83.155 97.6567567567568 374 58 100 5 1 370 1012 640 Thaumatomonas sp. TMT002 Hsp90 mRNA, partial cds blastn 36133 337 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002
9634304 9634304 PRJNA715462_P_NODE_32368_length_312_cov_1.334728_g31572_i0 PRJNA715462 32368 312 1.334728 4.16435136 Lecythium sp. 3678_261K 238773 SAR_Eukaryotes SAR_Eukaryotes 455 1.9e-123   NTclustered gi|33089893|gb|AY283756.1| 238773 g31572 i0 94 87.775641025641 300 18 96 0 13 312 397 98 Lecythium sp. 3678_261K actin gene, partial cds blastn 27386 455 1 Eukaryota Sar   Cercozoa Thecofilosea Tectofilosida Chlamydophryidae Lecythium Lecythium sp. 3678_261K
9634470 9634470 PRJNA715462_P_NODE_40568_length_279_cov_1.495146_g39772_i0 PRJNA715462 40568 279 1.495146 4.17145734 Paulinella chromatophora 39717 SAR_Eukaryotes SAR_Eukaryotes 300 8.310000000000001e-77   NTclustered gi|302563026|dbj|AB546336.1| 39717 g39772 i0 86.022 81.5770609318996 279 37 99 2 1 278 232 509 Paulinella chromatophora EF-1a mRNA for elongation factor 1alpha, partial cds blastn 22760 300 1 Eukaryota Sar   Cercozoa Imbricatea Euglyphida Paulinellidae Paulinella Paulinella chromatophora
13460255 13460255 PRJNA715462_P_NODE_7971_length_795_cov_2.923823_g7247_i0 PRJNA715462 7971 795 2.923823 23.24439285 Lecythium sp. 3678_261K 238773 SAR_Eukaryotes SAR_Eukaryotes 998 0   NTclustered gi|33089893|gb|AY283756.1| 238773 g7247 i0 94.969 82.6729559748428 636 32 80 0 160 795 765 130 Lecythium sp. 3678_261K actin gene, partial cds blastn 65725 998 1 Eukaryota Sar   Cercozoa Thecofilosea Tectofilosida Chlamydophryidae Lecythium Lecythium sp. 3678_261K
16008664 16008664 PRJNA715462_P_NODE_46873_length_261_cov_0.920213_g46077_i0 PRJNA715462 46873 261 0.920213 2.40175593 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 259 1.31e-64   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g46077 i0 86.122 80.6973180076628 245 28 92 6 21 261 3901 3659 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 21062 259 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
16495140 16495140 PRJNA715462_P_NODE_23233_length_377_cov_1.115132_g22437_i0 PRJNA715462 23233 377 1.115132 4.20404764 Verrucomonas 2545269 SAR_Eukaryotes SAR_Eukaryotes 198 4.36e-46   NTclustered gi|290760488|gb|GQ144691.1| 629763 g22437 i0 81.633 55.3660477453581 245 39 64 6 135 377 1487 1247 Cercozoa sp. CC-2009e large subunit ribosomal RNA gene, partial sequence blastn 20873 200 0.99 Eukaryota Sar   Cercozoa Thecofilosea Ventricleftida   Verrucomonas Verrucomonas bifida
17283847 17283847 PRJNA715462_P_NODE_33794_length_304_cov_2.099567_g32998_i0 PRJNA715462 33794 304 2.099567 6.38268368 Cercomonas agilis 310805 SAR_Eukaryotes SAR_Eukaryotes 315 3.27e-81   NTclustered gi|58414956|gb|AY748813.1| 310805 g32998 i0 86.62 150.542763157895 284 38 93 0 1 284 284 1 Cercomonas agilis polyubiquitin (UBQ) gene, partial cds blastn 45765 315 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas agilis
23659030 23659030 PRJNA715462_P_NODE_42439_length_273_cov_2.230000_g41643_i0 PRJNA715462 42439 273 2.23 6.0879 Capsellina sp. ATCC 50039 862254 SAR_Eukaryotes SAR_Eukaryotes 298 2.92e-76   NTclustered gi|300676756|gb|GQ377681.1| 862254 g41643 i0 86.842 87.2490842490842 266 35 97 0 7 272 772 507 Capsellina sp. ATCC 50039 actin gene, partial cds blastn 23819 298 1 Eukaryota Sar   Cercozoa Thecofilosea Cryomonadida Rhogostomidae Capsellina Capsellina sp. ATCC 50039
24932537 24932537 PRJNA715462_P_NODE_4200_length_1237_cov_5.766323_g3684_i0 PRJNA715462 4200 1237 5.766323 71.32941551 Viridiuvalis adhaerens 1977046 SAR_Eukaryotes SAR_Eukaryotes 187 3.32e-42   NTclustered gi|1248454657|dbj|LC229572.1| 1977046 g3684 i0 80.303 11.0549717057397 264 38 30 11 1 258 810 1065 Viridiuvalis adhaerens gene for 28S ribosomal RNA, partial sequence blastn 13675 187 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Viridiuvalis Viridiuvalis adhaerens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;