RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA715462" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA715462 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9633783 9633783 PRJNA715462_P_NODE_12748_length_566_cov_1.373225_g11957_i0 PRJNA715462 12748 566 1.373225 7.7724535 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 320 1.39e-82   NTclustered gi|657012511|gb|KF302595.1| 2850 g11957 i0 86.851 23.7243816254417 289 34 51 4 250 536 298 12 Phaeodactylum tricornutum clone C854 ubiquitin-ribosomal protein fusion S27a mRNA, partial cds blastn 13428 320 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
14734689 14734689 PRJNA715462_P_NODE_29412_length_329_cov_2.066406_g28616_i0 PRJNA715462 29412 329 2.066406 6.79847574 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 246 1.32e-60   NTclustered gi|657012369|gb|KF302532.1| 2850 g28616 i0 87.097 0.659574468085106 217 28 66 0 10 226 226 10 Phaeodactylum tricornutum clone C80 40S ribosomal protein mRNA, complete cds blastn 217 246 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
19832703 19832703 PRJNA715462_P_NODE_32076_length_314_cov_1.145228_g31280_i0 PRJNA715462 32076 314 1.145228 3.59601592 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 353 7.19e-93   NTclustered gi|657012465|gb|KF302574.1| 2850 g31280 i0 89.324 5.42675159235669 281 30 89 0 34 314 344 64 Phaeodactylum tricornutum clone C567 ribosomal protein mRNA, partial cds blastn 1704 353 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23658283 23658283 PRJNA715462_P_NODE_12619_length_570_cov_2.521127_g11829_i0 PRJNA715462 12619 570 2.521127 14.3704239 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 375 2.9399999999999998e-99   NTclustered gi|657012367|gb|KF302531.1| 2850 g11829 i0 87.616 75.2842105263158 323 40 57 0 1 323 345 23 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 42912 375 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;